SNP Profiles of GU 221/C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_221_/C
____AATTTT__AACCGGCC____AA__
2._GU_221_/C
____AATTTT__AACCGGCC____AA__
3._GU_221_/C
____AATTTT__AACCGGCC____AA__
4._GU_221_/C
____AATTTT__AACCGGCC____AA__
5._GU_221_/C
____AATTTT__AACCGGCC____AA__
6._GU_221_/C
____AATTTT__AACCGGCC____AA__
7._GU_221_/C
____AATTTT__AACCGGCC____AA__
8._GU_221_/C
____AATTTT__AACCGGCC____AA__
9._GU_221_/C
____AATTTT__AACCGGCC____AA__
10._GU_221_/C
____AATTTT__AACCGGCC____AA__
11._GU_221_/C
____AATTTT__AACCGGCC____AA__
12._RUQ_200
____AATTTT__AACCGGCC____AA__
13._GU_221_/C
____AATTTT__AACCGGCC____AA__
14._RUQ_200
____AA__________GG__GG______
15._RUQ_200B
____AA__________GG__GG______
16._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
17._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
18._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
19._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GU_221_/C
____AATTTT__AACCGGCC____AA__
31._GU_221_/C
____AATTTT__AACCGGCC____AA__
32._GC-01-75-4-11
AACCAAAAAAGGAAGGGGGGGGGGAAGG
33._RUQ_200
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAACCGGCCACCCCCCCGGAATTAAGG
1._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
2._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
3._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
4._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
5._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
6._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
7._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
8._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
9._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
10._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
11._GU_221_/C
AGAACCGGCCAC__CC__GG______GG
12._RUQ_200
AGAACCGGCCAC__CC__GG______GG
13._GU_221_/C
AGAACCGGCCAC______GG______GG
14._RUQ_200
__AA____CCACCC__CCGGAA__AAGG
15._RUQ_200B
__AA____CCACCC__CCGGAA__AAGG
16._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
17._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
18._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
19._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
20._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
21._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
22._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
23._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
24._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
25._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAA__AAGG
26._GC-01-075-4-11
AGAACCGGCCACCC__CTGGAATTAAGG
27._GC-01-075-4-11
AGAACCGGCCACCCCCCTGG__TTAAGG
28._GC-01-075-4-11
GGAACCGGCCCCCCCCCCGGAATTAAGG
29._GC-01-075-4-11
GGAACCGGCCCCCCCCCCGGAATTAAGG
30._GU_221_/C
GGAACCGGCCCC__CC__GG______GG
31._GU_221_/C
GGAACCGGCCCC__CC__GG______GG
32._GC-01-75-4-11
__AA__CCCCACGGGG__CCAAAAAACC
33._RUQ_200
__AA__CCCCACGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCCGGGGTTTTCTCCCCGGAG
1._GU_221_/C
__CCAA__CC______TT____CCGGAG
2._GU_221_/C
__CCAA__CC______TT____CCGGAG
3._GU_221_/C
__CCAA__CC______TT____CCGGAG
4._GU_221_/C
__CCAA__CC______TT____CCGGAG
5._GU_221_/C
__CCAA__CC______TT____CCGGAG
6._GU_221_/C
__CCAA__CC______TT____CCGGAG
7._GU_221_/C
__CCAA__CC______TT____CCGGAG
8._GU_221_/C
__CCAA__CC______TT____CCGGAG
9._GU_221_/C
__CCAA__CC______TT____CCGGAG
10._GU_221_/C
__CCAA__CC______TT____CCGGAG
11._GU_221_/C
__CCAA__CC______TT____CCGGAG
12._RUQ_200
__CCAA__CC______TT____CCGGAG
13._GU_221_/C
__CCAA__CC______TT____CCGGAG
14._RUQ_200
____AACC________TT______GG__
15._RUQ_200B
____AACC________TT______GG__
16._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
17._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
18._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
19._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
20._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
21._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
22._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
23._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
24._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
25._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
26._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
27._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
28._GC-01-075-4-11
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
29._GC-01-075-4-11
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
30._GU_221_/C
__CCGG__CC______TT____CCCCGG
31._GU_221_/C
__CCGG__CC______TT____CCCCGG
32._GC-01-75-4-11
__GGAA__GGCCGG__AAAGGGGGCCAG
33._RUQ_200
__GGAA__GGCCGG__AAAGGGGGCCAG

Input profile: GU_221_/C RUQ_200

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_221_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

2._GU_221_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

3._GU_221_/C

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

4._GU_221_/C

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

5._GU_221_/C

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

6._GU_221_/C

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

7._GU_221_/C

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

8._GU_221_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

9._GU_221_/C

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

10._GU_221_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

11._GU_221_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

12._GU_221_/C RUQ_200

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._GU_221_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

14._GU_221_/C RUQ_200

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._GU_221_/C RUQ_200B

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.997

16._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

26._GU_221_/C GC-01-075-4-11

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

27._GU_221_/C GC-01-075-4-11

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C

85.4 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

31._GU_221_/C

85.4 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

44.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484