SNP Profiles of GU 261/P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_261_/P
____AATTTT__AACCGGCC____AA__
2._GU_261_/P
____AATTTT__AACCGGCC____AA__
3._GU_261_/P
____AATTTT__AACCGGCC____AA__
4._GU_261_/P
____AATTTT__AACCGGCC____AA__
5._GU_261_/P
____AATTTT__AACCGGCC____AA__
6._GU_261_/P
____AATTTT__AACCGGCC____AA__
7._GU_261_/P
____AATTTT__AACCGGCC____AA__
8._GU_261_/P
____AATTTT__AACCGGCC____AA__
9._GU_261_/P
____AATTTT__AACCGGCC____AA__
10._GU_261_/P
____AATTTT__AACCGGCC____AA__
11._GU_261_/P
____AATTTT__AACCGGCC____AA__
12._GU_261_/P
____AATTTT__AACCGGCC____AA__
13._GU_261_/P
____AATTTT__AACCGGCC____AA__
14._GU_261_/P
____AATTTT__AACCGGCC____AA__
15._GU_261_/P
____AATTTT__AACCGGCC____AA__
16._GU_261_/P
____AATTTT__AACCGGCC____AA__
17._GU_261_/P
____AATTTT__AACCGGCC____AA__
18._GU_261_/P
____AATTTT__AACCGGCC____AA__
19._GU_261_/P
____AATTTT__AACCGGCC____AA__
20._GU_261_/P
____AATTTT__AACCGGCC____AA__
21._GU_261_/P
____AATTTT__AACCGGCC____AA__
22._GU_261_/P
____AATTTT__AACCGGCC____AA__
23._GU_261_/P
____AATTTT__AACCGGCC____AA__
24._GU_261_/P
____AATTTT__AACCGGCC____AA__
25._GU_261_/P
____AATTTT__AACCGGCC____AA__
26._GU_261_/P
____AATTTT__AACCGGCC____AA__
27._GU_261_/P
____AATTTT__AACCGGCC____AA__
28._RUQ_1370
____AATTTT__AACCGGCC____AA__
29._GU_261_/P
____AATT____AACCGGCC____AA__
30._GU_261_/P
____AATT____AACCGGCC____AA__
31._GU_261_/P
____AATTTT__AACCGGCC____AA__
32._GU_261_/P
____AATTTT__AACCGGCC____AA__
33._GU_261_/P
____AATTTT__AACCGGCC____AA__
34._RUQ_1370
____AA__________GG__GG______
35._GU_261_/P
____AATTTT__AACCGGCC____AA__
36._GU_261_/P
____AATT____ACCCGGCC____AA__
37._RUQ_1370
____AA__TTGGAAGGGG____GGAACC
38._RUQ_1370
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCACCCCCCCGGAATTAAGG
1._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
2._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
3._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
4._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
5._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
6._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
7._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
8._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
9._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
10._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
11._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
12._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
13._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
14._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
15._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
16._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
17._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
18._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
19._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
20._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
21._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
22._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
23._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
24._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
25._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
26._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
27._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
28._RUQ_1370
GGAACCGGCCAC__CC__GG______GG
29._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
30._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
31._GU_261_/P
GG__CCGGCCAC__CC__GG______GG
32._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
33._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
34._RUQ_1370
__AA____CCACCC__CCGGAA__AAGG
35._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
36._GU_261_/P
GGAACCGGCCAC__CC__GG______GG
37._RUQ_1370
________CCACCC____________CC
38._RUQ_1370
__AA__CCCCACGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
1._GU_261_/P
__CCGG__CC______TT____CCCCGG
2._GU_261_/P
__CCGG__CC______TT____CCCCGG
3._GU_261_/P
__CCGG__CC______TT____CCCCGG
4._GU_261_/P
__CCGG__CC______TT____CCCCGG
5._GU_261_/P
__CCGG__CC______TT____CCCCGG
6._GU_261_/P
__CCGG__CC______TT____CCCCGG
7._GU_261_/P
__CCGG__CC______TT____CCCCGG
8._GU_261_/P
__CCGG__CC______TT____CCCCGG
9._GU_261_/P
__CCGG__CC______TT____CCCCGG
10._GU_261_/P
__CCGG__CC______TT____CCCCGG
11._GU_261_/P
__CCGG__CC______TT____CCCCGG
12._GU_261_/P
__CCGG__CC______TT____CCCCGG
13._GU_261_/P
__CCGG__CC______TT____CCCCGG
14._GU_261_/P
__CCGG__CC______TT____CCCCGG
15._GU_261_/P
__CCGG__CC______TT____CCCCGG
16._GU_261_/P
__CCGG__CC______TT____CCCCGG
17._GU_261_/P
__CCGG__CC______TT____CCCCGG
18._GU_261_/P
__CCGG__CC______TT____CCCCGG
19._GU_261_/P
__CCGG__CC______TT____CCCCGG
20._GU_261_/P
__CCGG__CC______TT____CCCCGG
21._GU_261_/P
__CCGG__CC______TT____CCCCGG
22._GU_261_/P
__CCGG__CC______TT____CCCCGG
23._GU_261_/P
__CCGG__CC______TT____CCCCGG
24._GU_261_/P
__CCGG__CC______TT____CCCCGG
25._GU_261_/P
__CCGG__CC______TT____CCCCGG
26._GU_261_/P
__CCGG__CC______TT____CCCCGG
27._GU_261_/P
__CCGG__CC______TT____CCCCGG
28._RUQ_1370
__CCGG__CC______TT____CCCCGG
29._GU_261_/P
__CCGG__CC______TT____CCCCGG
30._GU_261_/P
__CCGG__CC______TT____CCCCGG
31._GU_261_/P
__CCGG__CC______TT____CCCCGG
32._GU_261_/P
__CCGG__CC______TT____CCCC__
33._GU_261_/P
____GG__CC______TT____CCCCGG
34._RUQ_1370
____GGCC________TT______CC__
35._GU_261_/P
__CCAG__CC______TT____CCCCGG
36._GU_261_/P
__CCGG__CC______GT____CCCC__
37._RUQ_1370
GGCC____CC__GGTT____CC__GG__
38._RUQ_1370
__GGGG__GGCCGG__AAAAGGGGGGGG

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

2._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

3._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

4._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

5._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

6._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

7._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

8._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

9._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

10._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

11._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

12._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

13._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

14._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

15._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

17._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

18._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

19._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

20._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

21._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

22._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

23._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

24._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

25._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

26._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

27._GU_261_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

28._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._GU_261_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

30._GU_261_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

31._GU_261_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

32._GU_261_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

33._GU_261_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

34._GU_261_/P RUQ_1370

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

35._GU_261_/P

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

36._GU_261_/P

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

37._GU_261_/P RUQ_1370

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484