SNP Profiles of ICS 40 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
1._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
2._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
3._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
4._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
5._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
6._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
7._RUQ_1432	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
8._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
9._ICS_40	__	__	AC	GT	CT	__	__	CG	AG	CT	__	__	AT	__
10._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
11._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
13._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
14._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
15._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	__	CG	AG	CT	AG	AG	AT	CG
16._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
17._GC-01-106-6-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
18._ICS_40	__	__	AC	GT	__	__	AC	__	AG	CT	__	__	__	__
19._RUQ_1432	__	__	AC	__	__	__	__	__	AG	__	AG	__	__	__
20._ICS_40	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
21._ICS_40	__	__	CC	GT	CC	__	AC	GG	AA	TT	__	__	AA	__
22._GC-01-106-6-03	CT	CC	AC	GG	TT	AG	CC	CC	AG	CC	GG	GG	AT	CG
23._ICS_40	__	__	AC	GG	TT	__	CC	CC	AG	CC	__	__	AT	__
24._RUQ_1432	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	CC	CG
1._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
2._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
3._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
4._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
5._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
6._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
7._RUQ_1432	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
8._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
9._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
10._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
11._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
12._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
13._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
14._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
15._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
16._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
17._GC-01-106-6-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
18._ICS_40	AG	CC	CT	GT	CC	__	__	CT	__	GT	__	__	__	CG
19._RUQ_1432	__	CC	__	__	CC	AC	CC	__	CT	GT	AG	__	CC	CG
20._ICS_40	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
21._ICS_40	AA	AC	CT	TT	CC	CC	__	CT	__	GG	__	__	__	CG
22._GC-01-106-6-03	AG	AA	CC	GG	GG	CC	CC	TT	TT	GT	AG	TT	AC	CC
23._ICS_40	AG	AA	CC	GG	GG	CC	__	TT	__	GT	__	__	__	CC
24._RUQ_1432	__	CC	__	AC	CC	AC	GG	AG	__	AC	AG	AC	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CG	CC	AA	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG	X_X
1._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
2._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
3._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
4._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
5._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
6._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
7._RUQ_1432	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
8._ICS_40	__	CC	AA	CT	__	__	__	__	__	__	CT	CG	AG	X_X
9._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
10._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
11._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
12._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
13._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
14._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
15._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
16._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	__	GT	TT	CT	CT	CG	AG	X_X
17._GC-01-106-6-03	CG	CC	AA	CT	GT	AG	AT	__	TT	CT	CT	CG	AG	X_X
18._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	GG	__	X_X
19._RUQ_1432	__	__	AA	__	__	__	__	GT	__	__	__	CG	__	X_X
20._ICS_40	__	CC	AA	CT	__	__	__	GT	__	__	CT	GG	AG	X_X
21._ICS_40	__	CC	AA	CC	__	__	__	GT	__	__	TT	GG	GG	X_X
22._GC-01-106-6-03	CG	TT	AA	CC	GG	GG	TT	GG	TT	CC	TT	CC	GG	X_X
23._ICS_40	__	TT	AA	CC	__	__	__	GG	__	__	TT	CC	GG	X_X
24._RUQ_1432	__	GG	AA	AG	AC	AG	__	AA	AG	AG	AG	CC	AG	X_X

Input profile: ICS_40 RUQ_1432

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_40

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 1

Dapeng Zhang, 2016

2._ICS_40

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 4

Dapeng Zhang, 2016

3._ICS_40

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 6

Dapeng Zhang, 2016

4._ICS_40

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 11

Dapeng Zhang, 2016

5._ICS_40

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 13

Dapeng Zhang, 2016

6._ICS_40

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 4 > FP

Dapeng Zhang, 2016

7._ICS_40 RUQ_1432

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._ICS_40

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 16

Dapeng Zhang, 2016

9._ICS_40

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 6 > FP

Dapeng Zhang, 2016

10._ICS_40 GC-01-106-6-03

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

11._ICS_40 GC-01-106-6-03

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

12._ICS_40 GC-01-106-6-03

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._ICS_40 GC-01-106-6-03

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

14._ICS_40 GC-01-106-6-03

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

15._ICS_40 GC-01-106-6-03

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL6

Notes: PL6 FP4

16._ICS_40 GC-01-106-6-03

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL4

Notes: PL4 FP3

17._ICS_40 GC-01-106-6-03

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

18._ICS_40

97.4 %
19 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block2

Dapeng Zhang, 2016

19._ICS_40 RUQ_1432

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.489 Cri
0.505

20._ICS_40

95.8 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0201 2A

Dapeng Zhang, 2016

21._ICS_40

66.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E287 T4

Dapeng Zhang, 2016

22._ICS_40 GC-01-106-6-03

59.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

23._ICS_40

54.2 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 9

Dapeng Zhang, 2016

24._ICS_40 RUQ_1432

52.8 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484