SNP Profiles of ICS 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
1._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
2._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
3._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
4._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
5._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
6._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
7._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
8._ICS_48	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
9._RUQ_146	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
10._GC-05-078-2-29	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
11._GC-05-078-2-29	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._GC-05-078-2-29	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
13._GC-05-078-2-29	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
14._GC-05-120-3-22	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
15._GC-05-120-3-22	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
16._GC-05-120-3-22	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
17._GC-05-120-3-22	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
18._RUQ_146	__	__	AC	__	__	__	__	__	AG	__	AG	__	__	__
19._ICS_48	__	__	AC	GT	CT	__	AC	__	AG	CT	__	__	AT	__
20._ICS_48	__	__	AC	GT	CT	__	AC	GG	AG	CT	__	__	AT	__
21._ICS_48	__	__	CC	TT	CC	__	AA	CC	AG	CT	__	__	AA	__
22._GC-05-078-2-29	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
23._RUQ_146	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG
24._ICS_48_Fld#_105_Plt#_2	AA	CC	CC	AC	AG	GG	AC	GG	AA	AG	GG	GG	AT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	GT	GG	AA	CC	CT	CC	TT	AG	GT	AC	CG
1._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
2._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
3._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
4._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
5._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
6._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
7._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
8._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
9._RUQ_146	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
10._GC-05-078-2-29	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
11._GC-05-078-2-29	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
12._GC-05-078-2-29	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
13._GC-05-078-2-29	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
14._GC-05-120-3-22	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
15._GC-05-120-3-22	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
16._GC-05-120-3-22	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
17._GC-05-120-3-22	AG	CC	CT	GT	CG	AC	CC	CT	CT	TT	AG	GT	AC	CG
18._RUQ_146	__	CC	__	__	CG	AC	CC	__	CC	TT	AG	__	AC	CG
19._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
20._ICS_48	AG	CC	CT	GT	CG	AC	__	CT	__	TT	__	__	__	CG
21._ICS_48	AA	CC	TT	TT	CG	CC	__	TT	__	GT	__	__	__	GG
22._GC-05-078-2-29	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
23._RUQ_146	__	CC	__	AC	CG	AC	GG	AG	__	AA	AG	AC	AC	CG
24._ICS_48_Fld#_105_Plt#_2	__	AC	__	AC	CC	AC	AG	AA	__	CC	AG	AA	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	CT	CT	CT	CG
1._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
2._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
3._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
4._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
5._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
6._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
7._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
8._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
9._RUQ_146	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	CG
10._GC-05-078-2-29	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
11._GC-05-078-2-29	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
12._GC-05-078-2-29	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
13._GC-05-078-2-29	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
14._GC-05-120-3-22	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
15._GC-05-120-3-22	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
16._GC-05-120-3-22	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
17._GC-05-120-3-22	CG	CC	GG	AA	CC	CT	GT	AG	AT	GT	TT	CT	CT	CG
18._RUQ_146	__	__	GG	AA	CC	__	__	__	__	GT	__	__	__	CG
19._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	GG
20._ICS_48	__	CC	__	AA	__	CT	__	__	__	GT	__	__	CT	GG
21._ICS_48	__	CC	__	AA	__	CC	__	__	__	TT	__	__	CT	GG
22._GC-05-078-2-29	CC	CC	AG	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG
23._RUQ_146	__	GG	GG	AA	__	AG	AC	AG	__	AA	AG	AG	AG	CC
24._ICS_48_Fld#_105_Plt#_2	__	GG	AA	AG	__	GG	CC	GG	__	AC	AA	AG	AG	CG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_146	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-078-2-29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-078-2-29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-078-2-29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-078-2-29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-120-3-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-120-3-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-05-120-3-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-120-3-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._RUQ_146	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._ICS_48	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._ICS_48	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-05-078-2-29	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._RUQ_146	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._ICS_48_Fld#_105_Plt#_2	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_48 RUQ_146

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

2._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

3._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

4._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

5._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

6._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

7._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

8._ICS_48

95.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

9._ICS_48 RUQ_146

95.8 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._ICS_48 GC-05-078-2-29

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._ICS_48 GC-05-078-2-29

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._ICS_48 GC-05-078-2-29

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._ICS_48 GC-05-078-2-29

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._ICS_48 GC-05-120-3-22

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._ICS_48 GC-05-120-3-22

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._ICS_48 GC-05-120-3-22

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

17._ICS_48 GC-05-120-3-22

95.3 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

18._ICS_48 RUQ_146

94.1 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

19._ICS_48

93.5 %
23 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

20._ICS_48

91.7 %
24 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

21._ICS_48

60.4 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

22._ICS_48 GC-05-078-2-29

55.8 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

23._ICS_48 RUQ_146

52.7 %
37 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

24._ICS_48 ICS_48_Fld#_105_Plt#_2

33.8 %
37 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 105, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484