SNP Profiles of ICS 6 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	CC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AT	CG
1._RUQ_721	__	__	CC	__	__	__	__	__	GG	__	GG	__	__	__
2._RUQ_721	__	__	CC	GT	CC	__	AA	CC	GG	CC	__	__	AT	__
3._ICS_6	__	__	CC	GT	CC	__	AA	__	GG	CC	__	__	AT	__
4._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	__	CT	AG	AG	AT	CG
5._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
6._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
7._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
8._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
9._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
10._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
11._GC-08-049-1-60	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._ICS_6	__	__	AC	GT	CT	__	AC	CG	__	CT	__	__	AT	__
13._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
14._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
15._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
16._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
17._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
18._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
19._ICS_6	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
20._RUQ_721	AG	AC	CC	AC	GG	GG	AA	GG	GG	GG	GG	AG	AT	CG
21._GC-08-49-1-60	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	TT	CC	AA	CC	CT	TT	GG	GG	TT	CC	CC
1._RUQ_721	__	CC	__	__	CC	AC	CC	__	TT	GG	GG	__	CC	CC
2._RUQ_721	AA	CC	CT	TT	CC	AC	__	CT	__	GG	__	__	__	CC
3._ICS_6	AA	CC	CT	TT	CC	AC	__	CT	__	GG	__	__	__	CC
4._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
5._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
6._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
7._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
8._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
9._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
10._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
11._GC-08-049-1-60	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	CC	CG
12._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
13._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
14._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
15._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
16._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
17._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
18._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
19._ICS_6	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
20._RUQ_721	__	CC	__	AA	CC	AC	GG	AG	__	CC	GG	AA	CC	GG
21._GC-08-49-1-60	__	CC	__	AC	CC	AC	GG	AG	__	AC	AG	AC	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	CC	AA	CC	TT	AG	AA	TT	TT	TT	TT	CG	AA	X_X
1._RUQ_721	__	__	AA	__	__	__	__	TT	__	__	__	CG	__	X_X
2._RUQ_721	__	CC	AA	CC	__	__	__	TT	__	__	TT	CG	AG	X_X
3._ICS_6	__	CC	AA	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
4._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
5._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
6._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
7._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
8._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
9._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
10._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
11._GC-08-049-1-60	CG	CC	AA	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG	X_X
12._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
13._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
14._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
15._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
16._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
17._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
18._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
19._ICS_6	__	CC	AA	CT	__	__	__	GT	__	__	CT	CG	AG	X_X
20._RUQ_721	__	GG	AA	GG	AA	AG	__	AA	AA	AA	AA	CC	AA	X_X
21._GC-08-49-1-60	__	GG	AA	AG	AC	AG	__	AA	AG	AG	AG	CC	AG	X_X

Input profile: ICS_6 RUQ_721

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_6 RUQ_721

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.696 Cri
0.299

2._ICS_6 RUQ_721

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._ICS_6

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

4._ICS_6 GC-08-049-1-60

71.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

8._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

11._ICS_6 GC-08-049-1-60

70.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

12._ICS_6

69.6 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 6

Dapeng Zhang, 2016

13._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 1

Dapeng Zhang, 2016

14._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 4

Dapeng Zhang, 2016

15._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 5

Dapeng Zhang, 2016

16._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 8

Dapeng Zhang, 2016

17._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 9

Dapeng Zhang, 2016

18._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 11

Dapeng Zhang, 2016

19._ICS_6

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 2 > FP

Dapeng Zhang, 2016

20._ICS_6 RUQ_721

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._ICS_6 GC-08-49-1-60

40.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2

Notes: Brazil_Selections_Poss_grandparent

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484