SNP Profiles of APA 4   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCTTCCGGAACCAACCGGGGAACC
1._RUQ_843
____CC__________AA__GG______
2._APA4
____CC__CCGGAAGGAA____GGAACC
3._RUQ_843
AACCCCAAGGGGAAGGAAGGGGGGAAGG
4._APA_4_Fld#_26_Plt#_1
AACCCCAAGGGGAAGGAAGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AACCTTCCAACCCCTTGGGGTTAAGGCC
1._RUQ_843
__AC__CCAACC__TTGGGG__AAGG__
2._APA4
______CCAACC____________CCGG
3._RUQ_843
__CCAACCAAGGGG__CCGGAAAACC__
4._APA_4_Fld#_26_Plt#_1
__CCAACCAAGGGG__CCGGAAAACC__
 29303132333435363738394041 
_Input profile
CCGGTTCCGGAATTTTCCTTCCGGAAX_X
1._RUQ_843
__GGTT________TT______GG__X_X
2._APA4
CC____CC__AATT____TT__CC__X_X
3._RUQ_843
GGGG__GGCCAA__AAGGAAGGCCAAX_X
4._APA_4_Fld#_26_Plt#_1
GGGG__GGCCAA__AAGGAAGGCCAAX_X

Input profile: APA_4 RUQ_843

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._APA_4 RUQ_843

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._APA_4 APA4

80 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._APA_4 RUQ_843

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._APA_4 APA_4_Fld#_26_Plt#_1

44.4 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 26, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484