SNP Profiles of EET 233   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGTCTGGACCGAGCTAAGGAACC
1._IMC_67___
____CC__________AG__AA______
2._IMC_67___
____CCGTCT__ACCGAGCT____AA__
3._IMC_67___
____CCGTCT__ACCGAGCT____AA__
4._IMC_67___
____CCGTCT__ACCGAGCT____AA__
5._IMC_67___
____CCGTCT__ACCGAGCT____AA__
6._IMC_67___
____CCGTCT__ACCGAGCT____AA__
7._IMC_67___
____CCGTCT__ACCGAGCT____AA__
8._IMC_67___
____CCGTCT__ACCGAGCT____AA__
9._IMC_67___
____CCGTCT__ACCGAGCT________
10._IMC_67___
____CCGTCT__ACCGAGCT________
11._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGGAACC
12._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGGAACC
13._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGGAACC
14._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGG__CC
15._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGG__CC
16._IMC_67___
____CCGTCT__ACCGAGCT____AA__
17._IMC_67___
____CCGTCT__ACCGAGCT____AA__
18._IMC_67___
____AA__CTGGACGGAA____GGATCC
19._IMC_67___
AACCCCACAGGGACCGAGAGAAGGAAGG
20._IMC_67___
AACCCCACAGGGACCGAGAGAAGGAAGG
21._IMC_67___
AACCCCACAGGGACCGAGAGAAGGAAGG
22._IMC_67___
AACCCCACAGGGACCGAGAGAAGGAAGG
23._IMC_67___
AAACACCCAAGGCCGGGGAGAGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCGTCGACCCCCTTGGGGTTCCCC
1._IMC_67___
__AC____GGACCC__TTGGGG__CCCC
2._IMC_67___
AAACCCGTGGAC__CC__GG______CC
3._IMC_67___
AAACCCGTGGAC__CC__GG______CC
4._IMC_67___
AAACCCGTGGAC__CC__GG______CC
5._IMC_67___
AAACCCGTGGAC__CC__GG______CC
6._IMC_67___
AAACCCGTGGAC__CC__GG______CC
7._IMC_67___
AAACCCGTGGAC__CC__GG______CC
8._IMC_67___
AAACCCGTGGAC__CC__GG______CC
9._IMC_67___
AAACCCGTGGAC__CC__GG______CC
10._IMC_67___
AAACCCGTGGAC__CC__GG______CC
11._IMC_67___
AAACCCGTGGACCCCCCCGGGGTTCCCC
12._IMC_67___
AAACCCGTGGACCCCCCCGGGGTTCCCC
13._IMC_67___
AAACCCGTGGACCCCCCCGGGGTTCCCC
14._IMC_67___
AAACCCGTGGACCCCCCCGGGGTTCCCC
15._IMC_67___
AAACCCGTGGACCCCCCCGGGGTTCCCC
16._IMC_67___
AAACCCGTGGAC__CC__GG______CC
17._IMC_67___
AAACCCGTGGAC__CC__GG______CC
18._IMC_67___
________GGACCC____________CG
19._IMC_67___
__AC__ACCGACGGGG__CCGGAACCGG
20._IMC_67___
__AC__ACCGACGGGG__CCGGAACCGG
21._IMC_67___
__AC__ACCGACGGGG__CCGGAACCGG
22._IMC_67___
__AC__ACCGACGGGG__CCGGAACCGG
23._IMC_67___
__CC__CCGGACGGAA__CCAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTAACCCCGGGGTTGTTTCCTTGGAG
1._IMC_67___
____AACC________GT______GG__
2._IMC_67___
__CTAA__CC______GT____TTGGAG
3._IMC_67___
__CTAA__CC______GT____TTGGAG
4._IMC_67___
__CTAA__CC______GT____TTGGAG
5._IMC_67___
__CTAA__CC______GT____TTGGAG
6._IMC_67___
__CTAA__CC______GT____TTGGAG
7._IMC_67___
__CTAA__CC______GT____TTGGAG
8._IMC_67___
__CTAA__CC______GT____TTGGAG
9._IMC_67___
__CTAA__CC______GT____TTGGAG
10._IMC_67___
__CTAA__CC______GT____TTGGAG
11._IMC_67___
CCCTAACCCCGGGGTTGTTTCCTTGGAG
12._IMC_67___
CCCTAACCCCGGGGTTGTTTCCTTGGAG
13._IMC_67___
CCCTAACCCCGGGGTTGTTTCCTTGGAG
14._IMC_67___
CCCTAACCCCGGGGTTGTTTCCTTGGAG
15._IMC_67___
CCCTAACCCCGGGGTTGTTTCCTTGGAG
16._IMC_67___
__CTAG__CC______GT____TTGGAG
17._IMC_67___
__CTAG__CC______GT____TTGGAG
18._IMC_67___
GGCC____CC__GGTT____CC__CG__
19._IMC_67___
__AGAA__GGCCGG__ACAAGGAACCAG
20._IMC_67___
__AGAA__GGCCGG__ACAAGGAACCAG
21._IMC_67___
__AGAA__GGCCGG__ACAAGGAACCAG
22._IMC_67___
__AGAA__GGCCGG__ACAAGGAACCAG
23._IMC_67___
__AGAA__GGCCGG__AAGGGGAGGGAA

Input profile: IMC_67 RUQ_1056

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_67 RUQ_1056

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._IMC_67

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

3._IMC_67

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

4._IMC_67

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

5._IMC_67

95.8 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

6._IMC_67

95.8 %
24 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

7._IMC_67

95.8 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

8._IMC_67

95.8 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

9._IMC_67

95.7 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

10._IMC_67

95.7 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016

11._IMC_67 GC-05-82-2-33

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

12._IMC_67 GC-05-82-2-33

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

13._IMC_67 GC-05-082-2-33

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._IMC_67 GC-05-82-2-33

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

15._IMC_67 GC-05-82-2-33

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

16._IMC_67 RUQ_1056

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._IMC_67

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

18._IMC_67 IMC67

70 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

20._IMC_67 GC-05-82-2-33

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._IMC_67 RUQ_1056

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

47.2 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

37.5 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484