SNP Profiles of NA 670 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
1._NA_670	__	__	CC	GG	CC	__	AA	CG	AG	CC	__	__	AA	__
2._NA_670	__	__	CC	GG	CC	__	AA	CG	AG	CC	__	__	AA	__
3._NA_670	__	__	CC	GG	CC	__	AA	CG	AG	CC	__	__	AA	__
4._NA_670	__	__	CC	GG	CC	__	AA	CG	AG	CC	__	__	AA	__
5._RUQ_1238	__	__	CC	GG	CC	__	AA	CG	AG	CC	__	__	AA	__
6._RUQ_1238	__	__	CC	__	__	__	__	__	AG	__	GG	__	__	__
7._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
8._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
9._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
10._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
11._NA_670	__	__	CC	GG	CC	__	AA	GG	AG	CC	__	__	AA	__
12._RUQ_1238	AA	CC	CC	CC	GG	GG	AA	CG	AG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GG	GG	AC	CC	CC	TT	GG	AG	TT	CC	CG
1._NA_670	AA	CC	CT	GG	GG	AC	__	CC	__	GG	__	__	__	CG
2._NA_670	AA	CC	CT	GG	GG	AC	__	CC	__	GG	__	__	__	CG
3._NA_670	AA	CC	CT	GG	GG	AC	__	CC	__	GG	__	__	__	CG
4._NA_670	AA	CC	CT	GG	GG	AC	__	CC	__	GG	__	__	__	CG
5._RUQ_1238	AA	CC	CT	GG	GG	AC	__	CC	__	GG	__	__	__	CG
6._RUQ_1238	__	CC	__	__	GG	AC	CC	__	TT	GG	AG	__	CC	CG
7._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
8._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
9._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
10._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
11._NA_670	AA	CC	CT	GG	GG	AC	__	CC	__	GG	__	__	__	CG
12._RUQ_1238	__	CC	__	CC	GG	AC	GG	GG	__	CC	AG	AA	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	GG	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC
1._NA_670	__	CC	__	AG	__	CC	__	__	__	GT	__	__	TT	CC
2._NA_670	__	CC	__	AG	__	CC	__	__	__	GT	__	__	TT	CC
3._NA_670	__	CC	__	AG	__	CC	__	__	__	GT	__	__	TT	CC
4._NA_670	__	CC	__	AG	__	CC	__	__	__	GT	__	__	TT	CC
5._RUQ_1238	__	CC	__	AG	__	CC	__	__	__	GT	__	__	TT	CC
6._RUQ_1238	__	__	GG	AG	CC	__	__	__	__	GT	__	__	__	CC
7._GC-05-169-4-22	CC	CC	GG	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC
8._GC-05-169-4-22	CC	CC	GG	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC
9._GC-05-169-4-22	CC	CC	GG	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC
10._GC-05-169-4-22	CC	CC	GG	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC
11._NA_670	__	CC	__	AG	__	CC	__	__	__	GT	__	__	TT	CC
12._RUQ_1238	__	GG	GG	AG	__	GG	CC	GG	__	AA	AA	GG	AA	GG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._NA_670	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._NA_670	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._NA_670	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._NA_670	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_1238	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_1238	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-05-169-4-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-05-169-4-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-05-169-4-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-169-4-22	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._NA_670	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_1238	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: NA_670 RUQ_1238

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._NA_670

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 5 > FP

Dapeng Zhang, 2016

2._NA_670

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 4 > FP

Dapeng Zhang, 2016

3._NA_670

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 3 > FP

Dapeng Zhang, 2016

4._NA_670

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 2 > FP

Dapeng Zhang, 2016

5._NA_670 RUQ_1238

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._NA_670 RUQ_1238

identical
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

LCT
0.209 Nan
0.711

7._NA_670 GC-05-169-4-22

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

8._NA_670 GC-05-169-4-22

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

9._NA_670 GC-05-169-4-22

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._NA_670 GC-05-169-4-22

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

11._NA_670

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D317 T4

Dapeng Zhang, 2016

12._NA_670 RUQ_1238

51.4 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484