SNP Profiles of PA150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCTGGAACCAACTAGGGAACC
1._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
2._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
3._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
4._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
5._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
6._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
7._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
8._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
9._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
10._POUND_7_/B___
____ACGGCT__AACCAACT____AA__
11._POUND_7_/B___
____AC__________AA__AG______
12._POUND_7_/B___
____AC__________AA__AG______
13._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
14._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
15._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
16._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
17._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
18._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
19._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
20._POUND_7_/B___
TTCCACGGCTGGAACCAACTAGGGAACC
21._POUND_7_/B___
AACCACCCAGGGAAGGAAAGAGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCTGTGGAACCCTTTGGGGTTACCC
1._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
2._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
3._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
4._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
5._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
6._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
7._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
8._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
9._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
10._POUND_7_/B___
AACCCTGTGGAA__CT__GG______CC
11._POUND_7_/B___
________GGAACC__TTGGGG__ACCC
12._POUND_7_/B___
________GGAACC__TTGGGG__ACCC
13._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
14._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
15._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
16._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
17._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
18._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
19._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
20._POUND_7_/B___
AACCCTGTGGAACCCTCCGGGGTTACCC
21._POUND_7_/B___
__CC__ACGGAAGGAG__CCGGAAACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CCAGCCCTGGGGTTTTTTCCTTCCAAX_X
1._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
2._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
3._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
4._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
5._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
6._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
7._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
8._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
9._POUND_7_/B___
__AG__CT______TT____TTCCAAX_X
10._POUND_7_/B___
__AG__CT______TT____TTCCAGX_X
11._POUND_7_/B___
__AGCT________TT______CC__X_X
12._POUND_7_/B___
__AGCT________TT______CC__X_X
13._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
14._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
15._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
16._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
17._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
18._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
19._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
20._POUND_7_/B___
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
21._POUND_7_/B___
__AG__AGCCGG__AAAAGGAAGGAAX_X

Input profile: POUND_7_/B RUQ_24

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

2._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

3._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

4._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

5._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

6._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

7._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

8._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

10._POUND_7_/B RUQ_24

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._POUND_7_/B RUQ_24

96.7 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

12._POUND_7_/B RUQ_24B

96.7 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

19._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

20._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._POUND_7_/B RUQ_24

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484