SNP Profiles of SCA 19   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGGTTGGCCCCAACTAAGGAAGG
1._SCA_19
____ACGGTT__CCCCAACT____AA__
2._SCA_19
____ACGGTT__CCCCAACT____AA__
3._SCA_19
____ACGGTT__CCCCAACT____AA__
4._SCA_19
____ACGGTT__CCCCAACT____AA__
5._SCA_19
____ACGGTT__CCCCAACT____AA__
6._SCA_19
____ACGGTT__CCCCAACT____AA__
7._SCA_19
____ACGGTT__CCCCAACT____AA__
8._SCA_19
____ACGGTT__CCCCAACT____AA__
9._SCA_19
____ACGGTT__CCCCAACT____AA__
10._SCA_19
____ACGGTT__CCCCAACT____AA__
11._SCA_19
____ACGGTT__CCCCAACT____AA__
12._RUQ_46
____ACGGTT__CCCCAACT____AA__
13._SCA_19
____ACGGTT__CCCCAACT____AA__
14._SCA_19
____ACGGTT__CCCCAACT____AA__
15._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
16._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
17._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
18._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
19._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
20._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
21._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
22._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
23._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
24._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
25._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
26._GC-03-004-1-04
TTCCACGGTTGGCCCCAACTAAGGAAGG
27._GC-03-004-1-04
TTCCCCGTCCGGAACGAGCTAGGGAACC
28._GC-03-004-1-04
TTCCCCGTCCGGAACGAGCTAGGGAACC
29._GC-03-004-1-04
TTCCCCGTCCGGAACGAGCTAGGGAACC
30._SCA_19
____CCGTCC__AACGAGCT____AA__
31._SCA_19
____CCGTCC__AACGAGCT____AA__
32._SCA_19
____CCGTCC__AACGAGCT____AA__
33._GC-03-4-1-4
AACCACCCAAGGCCGGAAAGAAGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCCCCCTTCTGGAATTCCCC
1._SCA_19
GGAACCGGCCCC__TT__GG______CC
2._SCA_19
GGAACCGGCCCC__TT__GG______CC
3._SCA_19
GGAACCGGCCCC__TT__GG______CC
4._SCA_19
GGAACCGGCCCC__TT__GG______CC
5._SCA_19
GGAACCGGCCCC__TT__GG______CC
6._SCA_19
GGAACCGGCCCC__TT__GG______CC
7._SCA_19
GGAACCGGCCCC__TT__GG______CC
8._SCA_19
GGAACCGGCCCC__TT__GG______CC
9._SCA_19
GGAACCGGCCCC__TT__GG______CC
10._SCA_19
GGAACCGGCCCC__TT__GG______CC
11._SCA_19
GGAACCGGCCCC__TT__GG______CC
12._RUQ_46
GGAACCGGCCCC__TT__GG______CC
13._SCA_19
GGAACCGGCCCC__TT__GG______CC
14._SCA_19
GGAACC__CCCC__TT__GG______CC
15._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
16._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
17._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
18._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
19._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
20._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
21._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
22._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
23._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
24._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
25._GC-03-004-1-04
GGAACC__CCCCCCTTTTGGAATTCCCC
26._GC-03-004-1-04
GGAACCGGCCCCCCTTTTGGAATTCCCC
27._GC-03-004-1-04
AACCCTGGGGAACCCCCCGTGGTTCCGG
28._GC-03-004-1-04
AACCCTGGGGAACCCCCCGTGGTTCCGG
29._GC-03-004-1-04
AACCCTGGGGAACCCCCCGTGGTT__GG
30._SCA_19
AACCCTGGGGAA__CC__GT______GG
31._SCA_19
AACCCTGGGGAA__CC__GT______GG
32._SCA_19
AACCCTGGGGAA__CC__GT______GG
33._GC-03-4-1-4
__AA__CCCCCCGGAA__CCAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAACCCCGGGGTTGGCTCCTTCC
1._SCA_19
__TT__AA__CC______GG____TTCC
2._SCA_19
__TT__AA__CC______GG____TTCC
3._SCA_19
__TT__AA__CC______GG____TTCC
4._SCA_19
__TT__AA__CC______GG____TTCC
5._SCA_19
__TT__AA__CC______GG____TTCC
6._SCA_19
__TT__AA__CC______GG____TTCC
7._SCA_19
__TT__AA__CC______GG____TTCC
8._SCA_19
__TT__AA__CC______GG____TTCC
9._SCA_19
__TT__AA__CC______GG____TTCC
10._SCA_19
__TT__AA__CC______GG____TTCC
11._SCA_19
__TT__AA__CC______GG____TTCC
12._RUQ_46
__TT__AA__CC______GG____TTCC
13._SCA_19
__TT__AA__CC______GG____TTCC
14._SCA_19
__TT__AA__CC______GG____TTCC
15._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGG__CCTTCC
16._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
17._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
18._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
19._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
20._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
21._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
22._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
23._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
24._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
25._GC-03-004-1-04
GGTTGGAACCCCGGGGTTGGTTCCTTCC
26._GC-03-004-1-04
GGTTGGAACCCCGGGGATGGTTCCTTCC
27._GC-03-004-1-04
CGCTGGAGCCCCGGGGTTGTTTCCTTCG
28._GC-03-004-1-04
CGCTGGAGCCCCGGGGTTGTTTCCTTCG
29._GC-03-004-1-04
CGCTGGAGCCCCGGGGTTGTTTCCTTCG
30._SCA_19
__CT__AG__CC______GT____TTCG
31._SCA_19
__CT__AG__CC______GT____TTCG
32._SCA_19
__CT__AG__CC______GT____TTCG
33._GC-03-4-1-4
__AAGGAA__GGCCGG__CCAGGGAAGG
 43              
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_46
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._SCA_19
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-004-1-04
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-004-1-04
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-03-004-1-04
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-03-004-1-04
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._SCA_19
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._SCA_19
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._SCA_19
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-03-4-1-4
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SCA_19 RUQ_46

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 6 > FP
 Dapeng Zhang, 2016

2._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 4 > FP
 Dapeng Zhang, 2016

3._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 12 > F
 Dapeng Zhang, 2016

4._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 1
 Dapeng Zhang, 2016

5._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 2
 Dapeng Zhang, 2016

6._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 5
 Dapeng Zhang, 2016

7._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 7
 Dapeng Zhang, 2016

8._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 10
 Dapeng Zhang, 2016

9._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 13
 Dapeng Zhang, 2016

10._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 14
 Dapeng Zhang, 2016

11._SCA_19

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 15
 Dapeng Zhang, 2016

12._SCA_19 RUQ_46

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._SCA_19

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 748
 Dapeng Zhang, 2016

14._SCA_19

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 11
 Dapeng Zhang, 2016

15._SCA_19 GC-03-004-1-04

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

18._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

20._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

22._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

23._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

24._SCA_19 GC-03-004-1-04

96.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

25._SCA_19 GC-03-004-1-04

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._SCA_19 GC-03-004-1-04

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

27._SCA_19 GC-03-004-1-04

60.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

28._SCA_19 GC-03-004-1-04

60.5 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

29._SCA_19 GC-03-004-1-04

59.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

30._SCA_19

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 9 > FP
 Dapeng Zhang, 2016

31._SCA_19

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 16
 Dapeng Zhang, 2016

32._SCA_19

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 8
 Dapeng Zhang, 2016

33._SCA_19 GC-03-4-1-4

44.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 1, Rep: 4, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484