SNP Profiles of SCA 24   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
1._GC-05-167-4-20
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
2._SCA_24
____AAGGTT__CCCCAGCT____AA__
3._SCA_24
____AAGGTT__CCCCAGCT____AA__
4._SCA_24
____AAGGTT__CCCCAGCT____AA__
5._SCA_24
____AAGGTT__CCCCAGCT____AA__
6._SCA_24
____AAGGTT__CCCCAGCT____AA__
7._SCA_24
____AAGGTT__CCCCAGCT____AA__
8._SCA_24
____AAGGTT__CCCCAGCT____AA__
9._SCA_24
____AAGGTT__CCCCAGCT____AA__
10._SCA_24
____AAGGTT__CCCCAGCT____AA__
11._SCA_24
____AAGGTT__CCCCAGCT____AA__
12._SCA_24
____AAGGTT__CCCCAGCT____AA__
13._SCA_24
____AAGGTT__CCCCAGCT____AA__
14._SCA_24
____AAGGTT__CCCCAGCT____AA__
15._GC-03-015-2-03
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
16._GC-03-015-2-03
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
17._GC-03-015-2-03
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
18._GC-03-015-2-03
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
19._GC-03-015-2-03
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
20._GC-03-015-2-03
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
21._GC-05-167-4-20
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
22._GC-05-167-4-20
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
23._GC-05-167-4-20
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
24._GC-05-167-4-20
TTCCAAGGTTGGCCCCAGCTAAGGAAGG
25._RUQ_357
____AAGGTT__CCCCAGCT____AA__
26._RUQ_357
____AAGGTT__CCCCAGCT____AA__
27._GC-03-15-2-3
AACCAACCAAGGCCGGAGAGAAGGAACC
28._GC-05-167-4-20
AACCAACCAAGGCCGGAGAGAAGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGACCCGGCCCCCTTTCTGGAATTCCCC
1._GC-05-167-4-20
GGACCCGGCCCCCTTT__GGAATTCCCC
2._SCA_24
GGACCCGGCCCC__TT__GG______CC
3._SCA_24
GGACCCGGCCCC__TT__GG______CC
4._SCA_24
GGACCCGGCCCC__TT__GG______CC
5._SCA_24
GGACCCGGCCCC__TT__GG______CC
6._SCA_24
GGACCCGGCCCC__TT__GG______CC
7._SCA_24
GGACCCGGCCCC__TT__GG______CC
8._SCA_24
GGACCCGGCCCC__TT__GG______CC
9._SCA_24
GGACCCGGCCCC__TT__GG______CC
10._SCA_24
GGACCCGGCCCC__TT__GG______CC
11._SCA_24
GGACCCGGCCCC__TT__GG______CC
12._SCA_24
GGACCCGGCCCC__TT__GG______CC
13._SCA_24
GGACCCGGCCCC__TT__GG______CC
14._SCA_24
GGACCCGGCCCC__TT__GG______CC
15._GC-03-015-2-03
GGACCCGGCCCC__TTTTGGAATTCCCC
16._GC-03-015-2-03
GGACCCGGCCCC__TTTTGGAATTCCCC
17._GC-03-015-2-03
GGACCCGGCCCC__TTTTGGAATTCCCC
18._GC-03-015-2-03
GGACCCGGCCCC__TTTTGGAATTCCCC
19._GC-03-015-2-03
GGACCCGGCCCC__TTTTGGAATTCCCC
20._GC-03-015-2-03
GGACCCGGCCCC__TTTTGGAATTCCCC
21._GC-05-167-4-20
GGACCCGGCCCC__TTTTGGAATTCCCC
22._GC-05-167-4-20
GGACCCGGCCCC__TTTTGGAATTCCCC
23._GC-05-167-4-20
GGACCCGGCCCC__TTTTGGAATTCCCC
24._GC-05-167-4-20
GGACCCGGCCCC__TTTTGGAATTCCCC
25._RUQ_357
GGACCCGGCCCC__TT__GG______CC
26._RUQ_357
GGACCCGGCCCC__TT__GG______CC
27._GC-03-15-2-3
__AC__CCCCCCAGAA__CCAAAACCGG
28._GC-05-167-4-20
__AC__CCCCCCAGAA__CCAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTAACCCCGGGGTTGGTTCCCTCCAA
1._GC-05-167-4-20
GGTTAACCCCGGGGTTGGTTCCCTCCAA
2._SCA_24
__TTAA__CC______GG____CTCCAA
3._SCA_24
__TTAA__CC______GG____CTCCAA
4._SCA_24
__TTAA__CC______GG____CTCCAA
5._SCA_24
__TTAA__CC______GG____CTCCAA
6._SCA_24
__TTAA__CC______GG____CTCCAA
7._SCA_24
__TTAA__CC______GG____CTCCAA
8._SCA_24
__TTAA__CC______GG____CTCCAA
9._SCA_24
__TTAA__CC______GG____CTCCAA
10._SCA_24
__TTAA__CC______GG____CTCCAA
11._SCA_24
__TTAA__CC______GG____CTCCAA
12._SCA_24
__TTAA__CC______GG____CTCCAA
13._SCA_24
__TTAA__CC______GG____CTCCAA
14._SCA_24
__TTAA__CC______GG____CTCCAA
15._GC-03-015-2-03
GGTTAACCCCGGGGTTGGTTCCCTCCAA
16._GC-03-015-2-03
GGTTAACCCCGGGGTTGGTTCCCTCCAA
17._GC-03-015-2-03
GGTTAACCCCGGGGTTGGTTCCCTCCAA
18._GC-03-015-2-03
GGTTAACCCCGGGGTTGGTTCCCTCCAA
19._GC-03-015-2-03
GGTTAACCCCGGGGTTGGTTCCCTCCAA
20._GC-03-015-2-03
GGTTAACCCCGGGGTTGGTTCCCTCCAA
21._GC-05-167-4-20
GGTTAACCCCGGGGTTGGTTCCCTCCAA
22._GC-05-167-4-20
GGTTAACCCCGGGGTTGGTTCCCTCCAA
23._GC-05-167-4-20
GGTTAACCCCGGGGTTGGTTCCCTCCAA
24._GC-05-167-4-20
GGTTAACCCCGGGGTTGGTTCCCTCCAA
25._RUQ_357
__TTAA__CC______GG____CTCCAG
26._RUQ_357
__TTAA__CC______GG____CTCCAG
27._GC-03-15-2-3
__AAAA__GGCCGG__CCAAGGAGGGAA
28._GC-05-167-4-20
__AAAA__GGCCGG__CCAAGGAGGGAA

Input profile: SCA_24 RUQ_357

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SCA_24 GC-05-167-4-20

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

2._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 3
 Dapeng Zhang, 2016

3._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 3 > FP
 Dapeng Zhang, 2016

4._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 2 > FP
 Dapeng Zhang, 2016

5._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 1 > FP
 Dapeng Zhang, 2016

6._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 5
 Dapeng Zhang, 2016

7._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 4
 Dapeng Zhang, 2016

8._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 2 > FP
 Dapeng Zhang, 2016

9._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 1 > FP
 Dapeng Zhang, 2016

10._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 10
 Dapeng Zhang, 2016

11._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 9
 Dapeng Zhang, 2016

12._SCA_24

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 5
 Dapeng Zhang, 2016

13._SCA_24

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 569
 Dapeng Zhang, 2016

14._SCA_24

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 569
 Dapeng Zhang, 2016

15._SCA_24 GC-03-015-2-03

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._SCA_24 GC-03-015-2-03

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

17._SCA_24 GC-03-015-2-03

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._SCA_24 GC-03-015-2-03

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SCA_24 GC-03-015-2-03

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._SCA_24 GC-03-015-2-03

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._SCA_24 GC-05-167-4-20

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._SCA_24 GC-05-167-4-20

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._SCA_24 GC-05-167-4-20

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._SCA_24 GC-05-167-4-20

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._SCA_24 RUQ_357

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._SCA_24 RUQ_357

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._SCA_24 GC-03-15-2-3

44.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 3, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

28._SCA_24 GC-05-167-4-20

44.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 4, Rep: 20, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484