SNP Profiles of UF 667 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
1._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
2._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
3._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
4._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
5._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
6._RUQ_55	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
7._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
8._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
9._UF_667	__	__	AC	GT	CT	__	AC	__	AG	CT	__	__	AT	__
10._UF_667	__	__	AC	GT	CT	__	AC	CG	AG	CT	__	__	AT	__
11._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
13._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
14._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
15._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
16._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	__	AG	CT	AG	AG	AT	CG
17._GC-01-029-2-06	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
18._UF_667	__	__	AC	GT	CT	__	AC	GG	AG	CT	__	__	AT	__
19._RUQ_55	__	__	AC	__	__	__	__	__	AG	__	AG	__	__	__
20._UF_667	__	__	AC	GT	CT	__	AA	CC	AG	CC	__	__	AA	__
21._GC-01-29-2-6	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG
22._RUQ_55	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG
23._UF_667_Fld#_119_Plt#_1	AG	AC	CC	AC	AA	AG	AA	GG	AA	AG	AA	GG	AT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
1._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
2._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
3._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
4._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
5._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
6._RUQ_55	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
7._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
8._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
9._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
10._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
11._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
12._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
13._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
14._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
15._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
16._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
17._GC-01-029-2-06	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
18._UF_667	AG	CC	CT	GT	CC	AC	__	CT	__	GT	__	__	__	CG
19._RUQ_55	__	AC	__	__	CC	AC	CC	__	CT	GT	AG	__	AC	CG
20._UF_667	AG	AA	CC	GG	CG	CC	__	TT	__	GG	__	__	__	GG
21._GC-01-29-2-6	__	CC	__	AC	CC	AC	GG	AG	__	AC	AG	AC	AC	CG
22._RUQ_55	__	CC	__	AC	CC	AC	GG	AG	__	AC	AG	AC	AC	CG
23._UF_667_Fld#_119_Plt#_1	__	AC	__	AC	CG	AC	GG	AA	__	CC	GG	AC	CC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	AG	CC	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
1._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
2._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
3._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
4._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
5._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
6._RUQ_55	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
7._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
8._UF_667	__	CC	AG	__	__	__	__	__	GT	__	__	CT	CG	AG
9._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
10._UF_667	__	CC	AG	__	__	__	__	__	GT	__	__	CT	CG	AG
11._GC-01-029-2-06	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
12._GC-01-029-2-06	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
13._GC-01-029-2-06	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
14._GC-01-029-2-06	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
15._GC-01-029-2-06	CG	CC	AG	CT	__	GT	AG	AT	GT	TT	CT	CT	CG	AG
16._GC-01-029-2-06	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
17._GC-01-029-2-06	CG	CC	AG	CT	__	GT	AG	AT	GT	TT	__	CT	CG	AG
18._UF_667	__	CC	AG	__	CT	__	__	__	GT	__	__	CT	CG	AG
19._RUQ_55	__	__	AG	CT	__	__	__	__	GT	__	__	__	CG	__
20._UF_667	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
21._GC-01-29-2-6	__	GG	AG	__	AG	AC	AG	__	AA	AG	AG	AG	CG	AG
22._RUQ_55	__	GG	AG	__	AG	AC	AG	__	AA	AG	AG	AG	CG	AG
23._UF_667_Fld#_119_Plt#_1	__	AG	AA	__	GG	AC	GG	__	AA	GG	AG	AG	CC	AG

Input profile: UF_667 RUQ_55

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._UF_667

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 5 > FP

Dapeng Zhang, 2016

2._UF_667

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 1 > FP

Dapeng Zhang, 2016

3._UF_667

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 10

Dapeng Zhang, 2016

4._UF_667

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 3

Dapeng Zhang, 2016

5._UF_667

97.9 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

6._UF_667 RUQ_55

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._UF_667

97.9 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0244

Dapeng Zhang, 2016

8._UF_667

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 7

Dapeng Zhang, 2016

9._UF_667

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 11 > F

Dapeng Zhang, 2016

10._UF_667

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 2

Dapeng Zhang, 2016

11._UF_667 GC-01-029-2-06

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._UF_667 GC-01-029-2-06

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._UF_667 GC-01-029-2-06

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

14._UF_667 GC-01-029-2-06

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._UF_667 GC-01-029-2-06

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._UF_667 GC-01-029-2-06

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

17._UF_667 GC-01-029-2-06

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

18._UF_667

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F466 T2

Dapeng Zhang, 2016

19._UF_667 RUQ_55

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

20._UF_667

64.6 %
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 292 I-042

Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

54.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

22._UF_667 RUQ_55

54.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

23._UF_667 UF_667_Fld#_119_Plt#_1

34.7 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 119, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484