SNP Profiles of LP3/35 [POU]   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCGGGGCCCCAACTGGTTCCAGAACC
1._EET_397_[ECU]___
__AC________AA__GG______AA__
2._EET_397_[ECU]___
__AC________AA__GG______AA__
3._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
4._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
5._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
6._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
7._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
8._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
9._EET_397_[ECU]___
__ACGG__CCCCAACT__AT__AGAACC
10._EET_397_[ECU]___
__ACGG__CCCC__CT__AT__AGAACC
11._EET_397_[ECU]___
__ACGG__CC__AACT__AT__AGAACC
12._EET_397_[ECU]___
TTACGGGGCCCCAACTGGATCGAGAACC
13._EET_397_[ECU]___
TTACGGGGCCCCAACTGGATCGAGAACC
14._EET_397_[ECU]___
TTACGGGGCCCCAACTGGATCGAGAACC
15._EET_397_[ECU]___
TTACGGGGCCCCAACTGGATCGAGAACC
16._EET_397_[ECU]___
TTACGGGGCCCCAACTGGATCGAGAACC
17._EET_397_[ECU]___
TTACGGGGCCCCAACTGGATCGAGAACC
18._EET_397_[ECU]___
TTACGGGGCCCC__CTGGATCGAGAACC
19._EET_397_[ECU]___
AAACCCGGCCGGAAAGGGATCG__AA__
20._EET_397_[ECU]___
AAACCCGGCCGGAAAGGGATCG__AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCGCTTTGGAATTCCCGGGCTAACCCC
1._EET_397_[ECU]___
__CGCT__GGAA__CCCG____AACC__
2._EET_397_[ECU]___
__CGCT__GGAA__CCCG____AACC__
3._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
4._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
5._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
6._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
7._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
8._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
9._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
10._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
11._EET_397_[ECU]___
GGCG__TTGG______CG__CTAA__CC
12._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
13._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
14._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
15._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
16._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
17._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
18._EET_397_[ECU]___
GGCGCTTTGGAATTCCCGGGCTAACCCC
19._EET_397_[ECU]___
CCCGAGAACCAAAACCCG__AGAA__GG
20._EET_397_[ECU]___
CCCGAGAACCAAAACCCG__AGAA__GG
 29 30 31 32 33 34 35 36       
_Input profile
GGATGGCTCCTTCCGGX_XX_XX_XX_XX_XX_X
1._EET_397_[ECU]___
____GG______CC__X_XX_XX_XX_XX_XX_X
2._EET_397_[ECU]___
____GG______CC__X_XX_XX_XX_XX_XX_X
3._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
4._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
5._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
6._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
7._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
8._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
9._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
10._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
11._EET_397_[ECU]___
____GG____TTCCGGX_XX_XX_XX_XX_XX_X
12._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
13._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
14._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
15._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
16._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
17._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
18._EET_397_[ECU]___
GGATGGTTCCTTCCGGX_XX_XX_XX_XX_XX_X
19._EET_397_[ECU]___
GG__CCAGGGAAGGGGX_XX_XX_XX_XX_XX_X
20._EET_397_[ECU]___
GG__CCAGGGAAGGGGX_XX_XX_XX_XX_XX_X

Input profile: EET_397_[ECU] RUQ_759

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_397_[ECU] RUQ_759

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._EET_397_[ECU] RUQ_759

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._EET_397_[ECU]

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 9
 Dapeng Zhang, 2016

4._EET_397_[ECU]

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 7
 Dapeng Zhang, 2016

5._EET_397_[ECU]

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 6
 Dapeng Zhang, 2016

6._EET_397_[ECU]

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 5
 Dapeng Zhang, 2016

7._EET_397_[ECU]

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 4
 Dapeng Zhang, 2016

8._EET_397_[ECU]

95.5 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 1
 Dapeng Zhang, 2016

9._EET_397_[ECU] RUQ_759

95.5 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._EET_397_[ECU]

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 2
 Dapeng Zhang, 2016

11._EET_397_[ECU]

95.2 %
21 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F456 T11
 Dapeng Zhang, 2016

12._EET_397_[ECU] GC-08-274-8-46

94.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_397_[ECU] GC-08-274-8-46

94.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._EET_397_[ECU] GC-08-274-8-46

94.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._EET_397_[ECU] GC-08-274-8-46

94.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._EET_397_[ECU] GC-08-274-8-46

94.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._EET_397_[ECU] GC-08-274-8-46

94.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._EET_397_[ECU] GC-08-274-8-46

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._EET_397_[ECU] RUQ_759

43.5 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

43.5 %
31 shared markers

USDA-TARS, United States of America
Location: Field: 117, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP144 3TcSNP150 4TcSNP174 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP329 10TcSNP372
11TcSNP448 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP602 18TcSNP619 19TcSNP723 20TcSNP731
21TcSNP799 22TcSNP823 23TcSNP872 24TcSNP878 25TcSNP891
26TcSNP998 27TcSNP999 28TcSNP1060 29TcSNP1111 30TcSNP1126
31TcSNP1253 32TcSNP1309 33TcSNP1439 34TcSNP1442 35TcSNP1458
36TcSNP1484