SNP Profiles of UF 12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTCCACGTCTCCGGGGCCAGGGAACCAG
1._EET_399_[ECU]___
____AC________GG__AG________
2._EET_399_[ECU]___
____ACGTCTCCGGGGCC____AA__AG
3._EET_399_[ECU]___
____ACGTCTCCGGGGCC____AA__AG
4._EET_399_[ECU]___
____ACGTCTCCGGGGCC____AA__AG
5._EET_399_[ECU]___
____ACGTCTCCGGGGCC____AA__AG
6._EET_399_[ECU]___
____ACGTCTCCGGGGCC____AA__AG
7._EET_399_[ECU]___
____ACGT__CCGGGGCC____AA__AG
8._EET_399_[ECU]___
____ACGT__CCGGGGCC____AA__AG
9._EET_399_[ECU]___
CTCCACGTCTCCGGGGCCAGGGAACGAG
10._EET_399_[ECU]___
CTCCACGTCTCCGGGGCCAGGGAACGAG
11._EET_399_[ECU]___
CTCCACGTCTCCGGGGCCAGGGAACGAG
12._EET_399_[ECU]___
CTCCACGT__CCGGGGCCAGGGAACGAG
13._EET_399_[ECU]___
CTCCACGT__CCGGGGCCAGGGAACGAG
14._EET_399_[ECU]___
CTCCACGTCTCCGGGGCCAGGGAACGAG
15._EET_399_[ECU]___
CTCCACGTCTCCGGGGCCAGGGAACGAG
16._EET_399_[ECU]___
____ACGTCTACCGAGCT____AT__AG
17._EET_399_[ECU]___
AGCCACACAGCCCCGGGGAGGGAACG__
18._EET_399_[ECU]___
____AC________AA__AA________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACCTGGGGACCCCTCTGTAGTTACCGGG
1._EET_399_[ECU]___
AC____GGACCC__CTGTAG__ACCG__
2._EET_399_[ECU]___
ACCTGGGGAC__CT__GT______CG__
3._EET_399_[ECU]___
ACCTGGGGAC__CT__GT______CG__
4._EET_399_[ECU]___
ACCTGGGGAC__CT__GT______CG__
5._EET_399_[ECU]___
__CTGGGGAC__CT__GT______CG__
6._EET_399_[ECU]___
ACCT__GGAC__CT__GT______CG__
7._EET_399_[ECU]___
ACCTGGGGAC__CT__GT______CG__
8._EET_399_[ECU]___
ACCTGGGGAC__CT__GT______CG__
9._EET_399_[ECU]___
ACCTGGGGACCCCTCTGTAGTTACCGGG
10._EET_399_[ECU]___
ACCTGGGGACCCCTCTGTAGTTACCGGG
11._EET_399_[ECU]___
ACCTGGGGACCCCTCTGTAGTTACCGGG
12._EET_399_[ECU]___
ACCTGGGGACCCCTCTGTAGTTACCGGG
13._EET_399_[ECU]___
ACCTGGGGACCCCTCTGTAGTTACCGGG
14._EET_399_[ECU]___
ACCT__GGACCCCTCTGTAGTTACCGGG
15._EET_399_[ECU]___
__CTGGGGACCCCTCTGTAGTTACCGGG
16._EET_399_[ECU]___
CCCTGTCCAC__CT__GT______CG__
17._EET_399_[ECU]___
AC__CCGGACGGAG__ACAGAAACCG__
18._EET_399_[ECU]___
CC____CCCCCT__CTGGAG__AAGG__
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
TTAACCCCGGGGTTGGCTCCTTCCAGX_X
1._EET_399_[ECU]___
__AACC________GG______CC__X_X
2._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
3._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
4._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
5._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
6._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
7._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
8._EET_399_[ECU]___
CTAA__CC______GG____TTCCAGX_X
9._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
10._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
11._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
12._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
13._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
14._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
15._EET_399_[ECU]___
CTAACCCCGGGGTTGGTTCCTTCCAGX_X
16._EET_399_[ECU]___
CCAG__CT______GT____CTCGAGX_X
17._EET_399_[ECU]___
AGAA__GGCCGG____AGGGAAGGAGX_X
18._EET_399_[ECU]___
__GGCT________GT______GG__X_X

Input profile: EET_399_[ECU] RUQ_745

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_399_[ECU] RUQ_745B

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._EET_399_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

3._EET_399_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

4._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._EET_399_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

6._EET_399_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU] GC-04-047-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

10._EET_399_[ECU] GC-04-047-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

11._EET_399_[ECU] GC-04-047-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

14._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

15._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._EET_399_[ECU]

66.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._EET_399_[ECU] RUQ_745

46.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484