SNP Profiles of EET-399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTAATTGGCTCCAAGGCCAA
1._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._EET_399_[ECU]___
____CC________GG__CC__GG__AA
14._EET_399_[ECU]___
CCAGCCTTCTACTTGGCTCCAAGGCCAA
15._EET_399_[ECU]___
__AGCCTT______GG________CCAA
16._EET_399_[ECU]___
CTAGCGCTTTAACCGTCTCTAAAACTAG
17._EET_399_[ECU]___
GGAGGGAAAGACAA______AAGGGGAA
18._EET_399_[ECU]___
____GG________GT__CT__AA__GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGTAACTACGGCTACAG
1._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
2._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
3._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
4._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
5._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
6._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
7._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
8._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
9._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCT__AG
10._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCT__AG
11._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
12._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
13._EET_399_[ECU]___
__________CGGTAA__ACGG__AC__
14._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGCTACAG
15._EET_399_[ECU]___
________TTCGGT__CTACGGCTACAG
16._EET_399_[ECU]___
CTAAGGTTCCCGGTGGCTACCCCTCCAG
17._EET_399_[ECU]___
AAAACGAGAGCGAC__AGACGG__AC__
18._EET_399_[ECU]___
__________GGGGAG__CCCC__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
1._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
2._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
3._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
4._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
5._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
6._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
7._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
8._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
9._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
10._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
11._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
12._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
13._EET_399_[ECU]___
______GG________AC____X_XX_XX_X
14._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
15._EET_399_[ECU]___
__AACCGGGGCCCTGTAC____X_XX_XX_X
16._EET_399_[ECU]___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
17._EET_399_[ECU]___
GGAAGGGGCCCCAGACACATGGX_XX_XX_X
18._EET_399_[ECU]___
______AA________AC____X_XX_XX_X

Input profile: EET_399_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

1._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

2._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

3._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

6._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

9._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

11._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

12._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

13._EET_399_[ECU] RUQ_745B

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._EET_399_[ECU] RUQ_745

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_399_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

53 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._EET_399_[ECU] RUQ_745

34.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25