SNP Profiles of EET 399 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
1._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
2._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
3._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
4._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
5._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
6._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
7._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
8._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
9._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
10._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
11._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
12._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
13._RUQ_745B	__	__	CC	__	__	__	__	GG	__	CC	__	GG	__	AA
14._RUQ_745	CC	AG	CC	TT	CT	AC	TT	GG	CT	CC	AA	GG	CC	AA
15._RUQ_745	__	AG	CC	TT	__	__	__	GG	__	__	__	__	CC	AA
16._EET_399_[ECU]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
17._RUQ_745	GG	AG	GG	AA	AG	AC	AA	__	__	__	AA	GG	GG	AA
18._RUQ_745	__	__	GG	__	__	__	__	GT	__	CT	__	AA	__	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
1._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
2._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
3._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
4._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
5._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
6._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
7._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	__	CT	AC
8._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	__
9._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	__
10._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	__	CT	AC
11._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
12._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
13._RUQ_745B	__	__	__	__	__	CG	GT	AA	__	AC	GG	__	__	AC
14._RUQ_745	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
15._RUQ_745	__	__	__	__	TT	CG	GT	__	CT	AC	GG	GG	CT	AC
16._EET_399_[ECU]	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
17._RUQ_745	AA	AA	CG	AG	AG	CG	AC	__	AG	AC	GG	CC	__	AC
18._RUQ_745	__	__	__	__	__	GG	GG	AG	__	CC	CC	__	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
1._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
2._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
3._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
4._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
5._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
6._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
7._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
8._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
9._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
10._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
11._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
12._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
13._RUQ_745B	__	__	__	__	GG	__	__	__	__	AC	__	__	X_X	X_X
14._RUQ_745	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
15._RUQ_745	AG	__	AA	CC	GG	GG	CC	CT	GT	AC	__	__	X_X	X_X
16._EET_399_[ECU]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
17._RUQ_745	__	GG	AA	GG	GG	CC	CC	AG	AC	AC	AT	GG	X_X	X_X
18._RUQ_745	__	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X

Input profile: EET_399_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

1._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

2._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

3._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

4._EET_399_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

5._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

6._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

7._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

10._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

11._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

12._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

13._EET_399_[ECU] RUQ_745B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

LCT
0.553 Nan
0.411

14._EET_399_[ECU] RUQ_745

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._EET_399_[ECU]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

51.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

18._EET_399_[ECU] RUQ_745

34.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.575 Cri
0.421

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25