SNP Profiles of EET-399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTAATTGGCTCCAAGGCCAA
1._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._EET_399_[ECU]___
____CC________GG__CC__GG__AA
14._EET_399_[ECU]___
CCAGCCTTCTACTTGGCTCCAAGGCCAA
15._EET_399_[ECU]___
__AGCCTT______GG________CCAA
16._EET_399_[ECU]___
CTAGCGCTTTAACCGTCTCTAAAACTAG
17._EET_399_[ECU]___
GGAGGGAAAGACAA______AAGGGGAA
18._EET_399_[ECU]___
____GG________GT__CT__AA__GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGTAACTACGGGGCTAC
1._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
2._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
3._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
4._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
5._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
6._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
7._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
8._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
9._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
10._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
11._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
12._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
13._EET_399_[ECU]___
__________CGGTAA__ACGG____AC
14._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
15._EET_399_[ECU]___
________TTCGGT__CTACGGGGCTAC
16._EET_399_[ECU]___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
17._EET_399_[ECU]___
AAAACGAGAGCGAC__AGACGGCC__AC
18._EET_399_[ECU]___
__________GGGGAG__CCCC____CC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
1._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
2._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
3._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
4._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
5._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
6._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
7._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
8._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
9._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
10._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
11._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
12._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
13._EET_399_[ECU]___
________GG______AC____X_XX_XX_X
14._EET_399_[ECU]___
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
15._EET_399_[ECU]___
AG__AACCGGGGCCGTAC____X_XX_XX_X
16._EET_399_[ECU]___
AGGGATCTAGCGACGTACATGGX_XX_XX_X
17._EET_399_[ECU]___
__GGAAGGGGCCCCACACATGGX_XX_XX_X
18._EET_399_[ECU]___
________AA______AC____X_XX_XX_X

Input profile: EET_399_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

1._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

2._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

7._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

10._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

12._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

13._EET_399_[ECU] RUQ_745B

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._EET_399_[ECU] RUQ_745

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_399_[ECU]

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

53 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._EET_399_[ECU] RUQ_745

34.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25