SNP Profiles of EET 399 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
1._RUQ_745	__	__	GG	__	__	__	__	GT	__	CT	__	AA	__	GG
2._RUQ_745	__	AG	CC	TT	__	__	__	GG	__	__	__	__	CC	AA
3._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
4._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
5._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
6._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
7._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
8._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
9._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
10._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
11._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
12._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
13._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
14._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
15._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
16._RUQ_745	CC	AG	CC	TT	CT	AC	TT	GG	CT	CC	AA	GG	CC	AA
17._RUQ_745B	__	__	CC	__	__	__	__	GG	__	CC	__	GG	__	AA
18._RUQ_745	GG	AG	GG	AA	AG	AC	AA	__	__	__	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
1._RUQ_745	__	__	__	__	__	GG	GG	AG	__	CC	CC	__	__	CC
2._RUQ_745	__	__	__	__	TT	CG	GT	__	CT	AC	GG	GG	CT	AC
3._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	__	CT	AC
4._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	__
5._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	__
6._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	__	CT	AC
7._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
8._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
9._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
10._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
11._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
12._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
13._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
14._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
15._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
16._RUQ_745	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
17._RUQ_745B	__	__	__	__	__	CG	GT	AA	__	AC	GG	__	__	AC
18._RUQ_745	AA	AA	CG	AG	AG	CG	AC	__	AG	AC	GG	CC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
1._RUQ_745	__	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X
2._RUQ_745	AG	__	AA	CC	GG	GG	CC	CT	GT	AC	__	__	X_X	X_X
3._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
4._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
5._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
6._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
7._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
8._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
9._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
10._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
11._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
12._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
13._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
14._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
15._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	__	GT	AC	AT	GG	X_X	X_X
16._RUQ_745	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
17._RUQ_745B	__	__	__	__	GG	__	__	__	__	AC	__	__	X_X	X_X
18._RUQ_745	__	GG	AA	GG	GG	CC	CC	AG	AC	AC	AT	GG	X_X	X_X

Input profile: EET_399_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

1._EET_399_[ECU] RUQ_745

73.1 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.575 Cri
0.421

2._EET_399_[ECU] RUQ_745

66.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._EET_399_[ECU] GC-04-047-3-11

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

4._EET_399_[ECU] GC-04-047-3-11

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._EET_399_[ECU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

6._EET_399_[ECU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

7._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

9._EET_399_[ECU] GC-04-047-3-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._EET_399_[ECU]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

11._EET_399_[ECU]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

12._EET_399_[ECU]

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

13._EET_399_[ECU] GC-04-047-3-11

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

14._EET_399_[ECU] GC-04-047-3-11

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

15._EET_399_[ECU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

16._EET_399_[ECU] RUQ_745

65 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745B

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

LCT
0.553 Nan
0.411

18._EET_399_[ECU] RUQ_745

39.7 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25