SNP Profiles of GU 125 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_125_/C
CCGGCCCCTTTTTTCCCC__GGCCGGCC
12._GC-01-138-7-17
CCGGCCCCTTTTTTCCCC__GGCCGGCC
13._RUQ_188
__GGCGCC____TT________CCAG__
14._RUQ_188
CCGGCGCCTTTTTTCCCCAAGGCCAGCC
15._RUQ_188
CCGGCGCCTTTTTTCCCCAAGGCCAGCC
16._RUQ_188
____CG______TT__CC__GG__AG__
17._GC-01-138-7-17
GGGGGGGGAAAAAA____AAGGGGGGGG
18._RUQ_188
GGGGCGGGAAAAAA____AAGGGGAGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAACCCCCCCCAAGGGG
1._GU_125_/C
AAGGCCCCGGGGAACCCCCCCCAAGGGG
2._GU_125_/C
AAGGCCCCGGGGAACCCCCCCCAAGGGG
3._GU_125_/C
AAGGCCCCGGGGAACCCCCCCCAAGGGG
4._GU_125_/C
AAGGCCCCGGGGAACCCCCCCCAAGGGG
5._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCCCAAGGGG
6._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCCCAAGGGG
7._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCCCAAGGGG
8._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCCCAAGGGG
9._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCCCAAGGGG
10._GU_125_/C
AAGGCCCCGGGGAACCCCCCCCAAGGGG
11._GU_125_/C
AAGGCCCCGGGGAACCCCCCCCAAGGGG
12._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCCCAAGGGG
13._RUQ_188
______CCGGGG__CCACCCCCAAGG__
14._RUQ_188
AAGGCCCCGGGGAGCCACCCCCAAGGGG
15._RUQ_188
AAGGCCCCGGGGAGCCACCCCCAAGGGG
16._RUQ_188
________GGGGAG__ACCC__AA____
17._GC-01-138-7-17
AAGGGGGGCCCC__GGCCCC__AA__GG
18._RUQ_188
AAGGGGGGCCCC__GGACCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._RUQ_188
AACCGGCCAATTTTAA____X_XX_XX_XX_X
14._RUQ_188
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
15._RUQ_188
AACCGGCCAATTGTAAATGGX_XX_XX_XX_X
16._RUQ_188
____GG________AA____X_XX_XX_XX_X
17._GC-01-138-7-17
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X
18._RUQ_188
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_125_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

1._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

2._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

3._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

4._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016

5._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

7._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._GU_125_/C

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

11._GU_125_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

12._GU_125_/C GC-01-138-7-17

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._GU_125_/C RUQ_188

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._GU_125_/C GC-01-138-7-17

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_125_/C RUQ_188

45.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25