SNP Profiles of GU 133/C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
1._GC-08-164-4-07
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
2._GC-08-164-4-07
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
3._GC-01-116-6-13
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
4._GC-01-116-6-13
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
5._GC-01-116-6-13
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
6._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
7._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
8._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
9._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
10._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
11._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
12._GC-08-164-4-07
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
13._GC-08-164-4-07
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
14._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
15._GC-01-116-6-13
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
16._GC-08-164-4-07
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
17._GC-08-164-4-07
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
18._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
19._GU_133_/C
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
20._GC-01-116-6-13
CCGGCGCC__TTCCCCAAGGCCGGCCAA
21._GU_133_/C
CCGGCGCC__TTCCCCAAGGCCGGCCAA
22._RUQ_190
__GGCGCC____________CCGG____
23._RUQ_190
CCGGCGCCTTTTCCCCAAGGCCGGCCAA
24._RUQ_190
____CG________CC__GG__GG____
25._RUQ_190
____CG______________CC__CC__
26._GC-01-116-6-13
GGGGCGGGAAAA____AAGGGGGGGGAA
27._MITC-000670
GGGGCGGGAAAA____AAGGGGGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCGGGGGGCCACCCGGCCAAGGGG
1._GC-08-164-4-07
GGCCCCGGGGGGCCACCCGGCCAAGGGG
2._GC-08-164-4-07
GGCCCCGGGGGGCCACCCGGCCAAGGGG
3._GC-01-116-6-13
GGCCCCGGGGGGCCACCCGGCCAAGGGG
4._GC-01-116-6-13
GGCCCCGGGGGGCCACCCGGCCAAGGGG
5._GC-01-116-6-13
GGCCCCGGGGGGCCACCCGGCCAAGGGG
6._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
7._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
8._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
9._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
10._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
11._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
12._GC-08-164-4-07
GGCCCCGGGGGGCCACCCGGCCAAGGGG
13._GC-08-164-4-07
GGCCCCGGGGGGCCACCCGGCCAAGGGG
14._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
15._GC-01-116-6-13
GGCCCCGGGGGGCCACCCGGCCAAGGGG
16._GC-08-164-4-07
GGCCCCGGGGGGCCACCCGGCCAAGGGG
17._GC-08-164-4-07
GGCCCCGGGGGGCCACCCGG__AAGGGG
18._GU_133_/C
GGCCCCGGGGGGCCACCCGGCCAAGGGG
19._GU_133_/C
GGCCCCGGGGGGCCACCCGG__AAGGGG
20._GC-01-116-6-13
GGCC__GGGGGGCCACCCGGCCAAGGGG
21._GU_133_/C
GGCC__GGGGGGCCACCCGGCCAAGGGG
22._RUQ_190
____CCGGGG__CCACCCGGCCAAGG__
23._RUQ_190
GGCCCCGGGGAACCACCCGGCCAAGGGG
24._RUQ_190
______GGGGAA__ACCC____AA____
25._RUQ_190
____CCCC______ACCC__________
26._GC-01-116-6-13
GGGGGGCCCC__GGACCCCC__AA__GG
27._MITC-000670
GGGGGGCCCC__GGACCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
1._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
2._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
3._GC-01-116-6-13
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
4._GC-01-116-6-13
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
5._GC-01-116-6-13
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
6._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
7._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
8._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
9._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
10._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
11._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
12._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
13._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
14._GU_133_/C
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
15._GC-01-116-6-13
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
16._GC-08-164-4-07
AACCGGCC__TTTTAAATGGX_XX_XX_XX_X
17._GC-08-164-4-07
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
18._GU_133_/C
AACCGGCC__TTTTAAATGGX_XX_XX_XX_X
19._GU_133_/C
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
20._GC-01-116-6-13
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
21._GU_133_/C
AACC__CCAATTTTAAATGGX_XX_XX_XX_X
22._RUQ_190
AACCGGCCAATTTTAA____X_XX_XX_XX_X
23._RUQ_190
AACCGGCCAATTGTAAATGGX_XX_XX_XX_X
24._RUQ_190
____GG________AA____X_XX_XX_XX_X
25._RUQ_190
AA__GGGGAATT__AA____X_XX_XX_XX_X
26._GC-01-116-6-13
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X
27._MITC-000670
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_133_/C

 
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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

1._GU_133_/C GC-08-164-4-07

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

7._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

8._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

10._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

11._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

12._GU_133_/C GC-08-164-4-07

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._GU_133_/C GC-08-164-4-07

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

15._GU_133_/C GC-01-116-6-13

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._GU_133_/C GC-08-164-4-07

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

19._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

20._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

21._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

22._GU_133_/C RUQ_190

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

51.5 %
33 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25