SNP Profiles of GU-136H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGGGCCTTTTTTCCCCAAGGCCAACC
1._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
2._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
3._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
4._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
5._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
6._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
7._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
8._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
9._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
10._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
11._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
12._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
13._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
14._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
15._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
16._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
17._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
18._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
19._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
20._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
21._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
22._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
23._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
24._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
25._GU_136_/H___
CCGGGGCCTTTT__CCCCAAGGCCAACC
26._GU_136_/H___
CCGGGGCCTTTT__CCCCAAGGCCAACC
27._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
28._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
29._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
30._GU_136_/H___
__GGGGCC____TT________CCAA__
31._GU_136_/H___
CCGGGGCCTTTTTTCCCCAAGGCCAACC
32._GU_136_/H___
____GG______TT__CC__GG__AA__
33._GU_136_/H___
GGGGCCGGAAAAAA____AAGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
1._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
2._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
3._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
4._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
5._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
6._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
7._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
8._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
9._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
10._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
11._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
12._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
13._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
14._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
15._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
16._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
17._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
18._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
19._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
20._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
21._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
22._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
23._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
24._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
25._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
26._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
27._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
28._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
29._GU_136_/H___
AAGGCCCCGGGGGGCCCCCCGGCCAAGG
30._GU_136_/H___
______CCGGGG__CCCCCCGGCCAAGG
31._GU_136_/H___
AAGGCCCCGGGGAACCCCCCGGCCAAGG
32._GU_136_/H___
________GGGGAA__CCCC____AA__
33._GU_136_/H___
AAGGGGGGCCCC__GGCCCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
21._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
22._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
23._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
24._GU_136_/H___
__AACCGGCCAATTTTAAATGGX_XX_XX_X
25._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
26._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
27._GU_136_/H___
GGAACCGGCCAATT__AAATGGX_XX_XX_X
28._GU_136_/H___
__AACCGGCCAATTTTAAATGGX_XX_XX_X
29._GU_136_/H___
GGAACCGGCCAATT__AAATGGX_XX_XX_X
30._GU_136_/H___
__AACCGGCCAATTTTAA____X_XX_XX_X
31._GU_136_/H___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
32._GU_136_/H___
______GG________AA____X_XX_XX_X
33._GU_136_/H___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_136_/H

 
Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

1._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

14._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

15._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

16._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

17._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

18._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

19._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

20._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

21._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

22._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

23._GU_136_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

24._GU_136_/H GC-03-019-2-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

26._GU_136_/H GC-03-019-2-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

28._GU_136_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

29._GU_136_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

30._GU_136_/H RUQ_221

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._GU_136_/H RUQ_221

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._GU_136_/H RUQ_221

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

33._GU_136_/H GC-03-19-2-8

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25