SNP Profiles of GU 136/H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGGGCCTTTTCCCCAAGGCCAACCAA
1._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
2._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
3._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
4._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
5._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
6._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
7._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
8._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
9._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
10._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
11._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
12._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
13._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
14._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
15._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
16._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
17._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
18._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
19._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
20._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
21._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
22._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
23._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
24._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
25._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
26._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
27._GC-03-019-2-08
CCGGGGCCTTTTCCCCAAGGCCAACCAA
28._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
29._GU_136_/H
CCGGGGCCTTTTCCCCAAGGCCAACCAA
30._RUQ_221
__GGGGCC____________CCAA____
31._RUQ_221
CCGGGGCCTTTTCCCCAAGGCCAACCAA
32._RUQ_221
____GG________CC__GG__AA____
33._GC-03-19-2-8
GGGGCCGGAAAA____AAGGGGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
1._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
2._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
3._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
4._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
5._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
6._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
7._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
8._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
9._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
10._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
11._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
12._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
13._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
14._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
15._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
16._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
17._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
18._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
19._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
20._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
21._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
22._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
23._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
24._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
25._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
26._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGG__
27._GC-03-019-2-08
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
28._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGG__
29._GU_136_/H
GGCCCCGGGGGGCCCCCCGGCCAAGGGG
30._RUQ_221
____CCGGGG__CCCCCCGGCCAAGG__
31._RUQ_221
GGCCCCGGGGAACCCCCCGGCCAAGGGG
32._RUQ_221
______GGGGAA__CCCC____AA____
33._GC-03-19-2-8
GGGGGGCCCC__GGCCCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
1._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
2._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
3._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
4._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
5._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
6._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
7._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
8._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
9._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
10._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
11._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
12._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
13._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
14._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
15._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
16._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
17._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
18._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
19._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
20._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
21._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
22._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
23._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
24._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
25._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
26._GC-03-019-2-08
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
27._GC-03-019-2-08
AACCGGCCAATT__AAATGGX_XX_XX_XX_X
28._GU_136_/H
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
29._GU_136_/H
AACCGGCCAATT__AAATGGX_XX_XX_XX_X
30._RUQ_221
AACCGGCCAATTTTAA____X_XX_XX_XX_X
31._RUQ_221
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
32._RUQ_221
____GG________AA____X_XX_XX_XX_X
33._GC-03-19-2-8
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_136_/H

 
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Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

1._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

8._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

9._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

14._GU_136_/H GC-03-019-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

15._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

16._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

17._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

18._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

19._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

20._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

21._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

22._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

23._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

24._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

25._GU_136_/H

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

26._GU_136_/H GC-03-019-2-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

28._GU_136_/H

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

29._GU_136_/H

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

30._GU_136_/H RUQ_221

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._GU_136_/H RUQ_221

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._GU_136_/H RUQ_221

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

33._GU_136_/H GC-03-19-2-8

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25