SNP Profiles of GU 168 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCTTTCCTTCCTTAAAACCGGTT
1._GU_168_/H___
TTAAGGCTTTCCTTCCTTAAAACCGGTT
2._GU_168_/H___
__AGGGCC____TT________CCAG__
3._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_168_/H___
CCAGGGCCTTTTTTCCCCAAGGCCAGCT
6._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
21._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
22._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
23._GU_168_/H___
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
24._GU_168_/H___
____GG______TT__CC__GG__AG__
25._GU_168_/H___
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCTTCCGGGGGGTTCCCCTTTTCCAA
1._GU_168_/H___
AACCTTCCGGGGGGTTCCCCTTTTCCAA
2._GU_168_/H___
______CCGGGG__CCCCCCGGCCAAAG
3._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
4._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
5._GU_168_/H___
AAGGCCCCGGGGAACCCCCCGGCCAAAG
6._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
7._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
8._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
9._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
10._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
11._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
12._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
13._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
14._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
15._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
16._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
17._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
18._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
19._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
20._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
21._GU_168_/H___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
22._GU_168_/H___
AAGGCCCCGGGGAGCCCC__GGCCAAGG
23._GU_168_/H___
AAGGCCCCGGGGAGCCCC__GGCCAAGG
24._GU_168_/H___
________GGGGAA__CCCC____AA__
25._GU_168_/H___
AAGGGGGGCCCC__GGCCCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCAACCAACCTTACTTGGX_XX_XX_X
1._GU_168_/H___
GGAACCAACCAACCTTACTTGGX_XX_XX_X
2._GU_168_/H___
__AACCGGCCAATTTTAA____X_XX_XX_X
3._GU_168_/H___
GGAACCGGCCAA__TTAATTGGX_XX_XX_X
4._GU_168_/H___
GGAACCGGCCAA__TTAATTGGX_XX_XX_X
5._GU_168_/H___
AGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_168_/H___
GGAACCGGCCAATTTT__TTGGX_XX_XX_X
7._GU_168_/H___
GGAACCGGCCAATTTT__TTGGX_XX_XX_X
8._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
9._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
10._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
11._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
12._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
13._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
14._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
15._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
16._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
17._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
18._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
19._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
20._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
21._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
22._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
23._GU_168_/H___
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
24._GU_168_/H___
______GG________AA____X_XX_XX_X
25._GU_168_/H___
GGAAGGGGGGAAAAAAAATTGGX_XX_XX_X

Input profile: GU_168_/H

 
Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

1._GU_168_/H GC-03-023-2-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._GU_168_/H RUQ_223

64.6 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_168_/H

56.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

4._GU_168_/H GC-03-023-2-12

56.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

5._GU_168_/H RUQ_223

56.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._GU_168_/H GC-03-023-2-12

55.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_168_/H

55.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

8._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

11._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

15._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

16._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

17._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

18._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

19._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

20._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

21._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

22._GU_168_/H GC-03-023-2-12

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

23._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

24._GU_168_/H RUQ_223

53.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

25._GU_168_/H GC-03-23-2-12

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25