SNP Profiles of GU241/P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGCCTTCCTTTTCCCCAAGGCCAA
1._RUQ_1431
__AGCGCC______TT________CCAA
2._RUQ_1431
____CG________TT__CC__GG__AA
3._GU_241_/P
CCAGCGCCTT__TTTTCCCCAAGGCCAA
4._GU_241_/P
CCAGCGCCTT__TTTTCCCCAAGGCCAA
5._GU_241_/P
CCAGCGCCTT__TTTTCCCCAAGGCCAA
6._GU_241_/P
CCAGCGCCTT__TTTTCCCCAAGGCCAA
7._GU_241_/P
__AGCGCCTT__TTTTCCCCAAGGCCAA
8._RUQ_1431
CCAGCGCCTTCCTTTTCCCCAAGGCCAA
9._RUQ_1431
GGAGCGGGAACCAAAA____AAGGGGAA
10._MITC-000612
GGAGCGGGAACCAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCCCCGGGGAGCCACCCGGCCAA
1._RUQ_1431
________CCGGGG__CCACCCGGCCAA
2._RUQ_1431
__________GGGGAG__ACCC____AA
3._GU_241_/P
CTAAGGCCCCGGGGAGCCACCCGGCCAA
4._GU_241_/P
CTAAGGCCCCGGGGAGCCACCCGGCCAA
5._GU_241_/P
CTAAGGCCCCGGGGAGCCACCCGGCCAA
6._GU_241_/P
CTAAGGCCCCGGGGAGCCACCCGGCCAA
7._GU_241_/P
CTAAGGCCCCGGGGAGCCACCCGGCCAA
8._RUQ_1431
CTAAGGCCCCGGGGAGCCACCCGGCCAA
9._RUQ_1431
AGAAGGGGGGCCCC__GGACCCCC__AA
10._MITC-000612
AGAAGGGGGGCCCC__GGACCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGAGAACCGGAATTTTAAATGGX_XX_XX_X
1._RUQ_1431
AG__AACCGGAATTTTAA____X_XX_XX_X
2._RUQ_1431
________GG______AA____X_XX_XX_X
3._GU_241_/P
AGGGAACCGGAATTTTAAATGGX_XX_XX_X
4._GU_241_/P
AGGGAACCGGAATTTTAAATGGX_XX_XX_X
5._GU_241_/P
AGGGAACCGGAATTTTAAATGGX_XX_XX_X
6._GU_241_/P
AGGGAACCGGAATTTTAAATGGX_XX_XX_X
7._GU_241_/P
AGGGAACCGGAATTTTAAATGGX_XX_XX_X
8._RUQ_1431
AGGGAACCGGAATTGTAAATGGX_XX_XX_X
9._RUQ_1431
__GGAAGGGGAAAAAAAAATGGX_XX_XX_X
10._MITC-000612
__GGAAGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_241_/P

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y33
 Dapeng Zhang, 2016

1._GU_241_/P RUQ_1431

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_241_/P RUQ_1431

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_241_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 10
 Dapeng Zhang, 2016

4._GU_241_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 3
 Dapeng Zhang, 2016

5._GU_241_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 2
 Dapeng Zhang, 2016

6._GU_241_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 1
 Dapeng Zhang, 2016

7._GU_241_/P

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 9
 Dapeng Zhang, 2016

8._GU_241_/P RUQ_1431

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._GU_241_/P RUQ_1431

51.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._GU_241_/P MITC-000612

51.5 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25