SNP Profiles of GU 241   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGCCTTTTTTCCCCAAGGCCAACT
1._GU_241_/P___
CCAGCGCCTTTTTTCCCCAAGGCCAACT
2._GU_241_/P___
CCAGCGCCTTTTTTCCCCAAGGCCAACT
3._GU_241_/P___
CCAGCGCCTTTTTTCCCCAAGGCCAACT
4._GU_241_/P___
__AGCGCCTTTTTTCCCCAAGGCCAACT
5._GU_241_/P___
__AGCGCC____TT________CCAA__
6._GU_241_/P___
____CG______TT__CC__GG__AA__
7._GU_241_/P___
CCAGCGCCTTTTTTCCCCAAGGCCAACT
8._GU_241_/P___
CCAGCGCCTTTTTTCCCCAAGGCCAACT
9._GU_241_/P___
GGAGCGGGAAAAAA____AAGGGGAAAG
10._GU_241_/P___
GGAGCGGGAAAAAA____AAGGGGAAAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCAAAG
1._GU_241_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
2._GU_241_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
3._GU_241_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
4._GU_241_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
5._GU_241_/P___
______CCGGGG__CCACCCGGCCAAAG
6._GU_241_/P___
________GGGGAG__ACCC____AA__
7._GU_241_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
8._GU_241_/P___
AAGGCCCCGGGGAGCCACCCGGCCAAAG
9._GU_241_/P___
AAGGGGGGCCCC__GGACCCCC__AA__
10._GU_241_/P___
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GU_241_/P___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GU_241_/P___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GU_241_/P___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GU_241_/P___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GU_241_/P___
__AACCGGCCAATTTTAA____X_XX_XX_X
6._GU_241_/P___
______GG________AA____X_XX_XX_X
7._GU_241_/P___
GGAACCGGCCAATTGTAAATGGX_XX_XX_X
8._GU_241_/P___
AGAACCGG__AATTTTAAATGGX_XX_XX_X
9._GU_241_/P___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
10._GU_241_/P___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_241_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8838 1
 Dapeng Zhang, 2016

1._GU_241_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 10
 Dapeng Zhang, 2016

2._GU_241_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 3
 Dapeng Zhang, 2016

3._GU_241_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 2
 Dapeng Zhang, 2016

4._GU_241_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 9
 Dapeng Zhang, 2016

5._GU_241_/P RUQ_1431

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._GU_241_/P RUQ_1431

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

7._GU_241_/P RUQ_1431

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._GU_241_/P

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y33
 Dapeng Zhang, 2016

9._GU_241_/P RUQ_1431

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._GU_241_/P MITC-000612

50 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25