SNP Profiles of GU 261 /P   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTCCTTTTCCCCAAGGCCGG
1._RUQ_1370
__GGCCCC______TT________CCGG
2._RUQ_1370
____CC________TT__CC__GG__GG
3._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
4._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
5._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
6._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
7._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
8._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
9._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
10._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
11._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
12._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
13._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
14._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
15._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
16._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
17._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
18._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
19._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
20._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
21._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
22._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
23._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
24._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
25._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
26._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
27._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
28._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
29._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
30._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
31._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
32._GU_261_/P
CC__CCCCTT__TTTTCCCCAAGGCCGG
33._GU_261_/P
CCGGCCCCTT__TTTTCCCCAAGGCCGG
34._GU_261_/P
CCGGCCCCTT__TTTTCCCC__GGCCGG
35._GU_261_/P
CCGGCCCCTTCCTTTTCCCCAAGGCCAG
36._GU_261_/P
CC__CCCCTT__TTGTCCCC__GGCCGG
37._RUQ_1370
____GG__________________CC__
38._RUQ_1370
GGGGGGGGAACCAAAA____AAGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCGGGGAACCACCCGGCCAA
1._RUQ_1370
________CCGGGG__CCACCCGGCCAA
2._RUQ_1370
__________GGGGAA__ACCC____AA
3._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
4._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
5._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
6._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
7._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
8._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
9._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
10._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
11._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
12._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
13._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
14._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
15._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
16._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
17._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
18._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
19._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
20._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
21._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
22._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
23._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
24._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
25._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
26._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
27._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
28._GU_261_/P
__AAGGCCCCGGGGAGCCACCCGGCCAA
29._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
30._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
31._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCC__
32._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
33._GU_261_/P
CCAAGG__CCGGGGAGCCACCCGGCCAA
34._GU_261_/P
CCAAGGCC__GGGGAGCCACCCGGCCAA
35._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
36._GU_261_/P
CCAAGGCCCCGGGGAGCCACCCGGCCAA
37._RUQ_1370
CC______CCCC______ACCC______
38._RUQ_1370
GGAAGGGGGGCCCC__GGACCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
1._RUQ_1370
GG__AACCGGCCAATTTTAA____X_XX_X
2._RUQ_1370
________GG________AA____X_XX_X
3._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
4._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
5._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
6._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
7._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
8._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
9._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
10._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
11._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
12._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
13._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
14._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
15._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
16._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
17._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
18._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
19._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
20._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
21._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
22._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
23._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
24._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
25._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
26._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
27._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
28._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
29._GU_261_/P
GGGGAACCGGCCAA__TTAAAAGGX_XX_X
30._GU_261_/P
GGGGAACCGGCCAA__TTAAAAGGX_XX_X
31._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
32._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
33._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
34._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
35._GU_261_/P
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
36._GU_261_/P
GGGGAACCGGCCAC__TTAAAAGGX_XX_X
37._RUQ_1370
____AA__GGGGAATT__AA____X_XX_X
38._RUQ_1370
__GGAAGGGGGGAAAAAAAAAAGGX_XX_X

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_261_/P RUQ_1370

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

4._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

5._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

6._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

7._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

8._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

9._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

10._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

11._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

12._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

13._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

14._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

15._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

16._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

17._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

18._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

19._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

20._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

21._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

22._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

23._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

24._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

25._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

26._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

27._GU_261_/P

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

28._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

29._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

30._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

31._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

32._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

33._GU_261_/P

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

34._GU_261_/P

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

35._GU_261_/P

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

36._GU_261_/P

95.8 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25