SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
21._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
22._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
23._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
24._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
25._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
26._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGG__
27._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
28._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GU_261_/P
CC__CCCCTTTTTTCCCCAAGGCCGGCC
30._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
31._GU_261_/P
CCGGCCCCTTTTTTCCCC__GGCCGGCC
32._RUQ_1370
__GGCCCC____TT________CCGG__
33._RUQ_1370
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
34._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
35._GU_261_/P
CC__CCCCTTTTGTCCCC__GGCCGGCC
36._RUQ_1370
____CC______TT__CC__GG__GG__
37._RUQ_1370
____GG________________CC__CC
38._RUQ_1370
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCGGGG
1._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
2._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
3._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
4._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
5._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
6._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
7._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
8._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
9._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
10._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
11._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
12._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
13._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
14._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
15._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
16._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
17._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
18._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
19._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
20._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
21._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
22._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
23._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
24._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
25._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
26._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
27._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
28._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
29._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
30._GU_261_/P
AAGG__CCGGGGAGCCACCCGGCCGGGG
31._GU_261_/P
AAGGCC__GGGGAGCCACCCGGCCGGGG
32._RUQ_1370
______CCGGGG__CCACCCGGCCGG__
33._RUQ_1370
AAGGCCCCGGGGAACCACCCGGCCGGGG
34._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
35._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCGGGG
36._RUQ_1370
________GGGGAA__ACCC________
37._RUQ_1370
______CCCC______ACCC________
38._RUQ_1370
AAGGGGGGCCCC__GGACCCCC____GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
14._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
15._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
16._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
17._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
18._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
19._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
20._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
21._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
22._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
23._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
24._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
25._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
26._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
27._GU_261_/P
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
28._GU_261_/P
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
29._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
30._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
31._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
32._RUQ_1370
AACCGGCCAATTTTAA____X_XX_XX_XX_X
33._RUQ_1370
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
34._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
35._GU_261_/P
AACCGGCCAC__TTAAAAGGX_XX_XX_XX_X
36._RUQ_1370
____GG________AA____X_XX_XX_XX_X
37._RUQ_1370
AA__GGGGAATT__AA____X_XX_XX_XX_X
38._RUQ_1370
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

1._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

2._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

3._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

4._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

5._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

6._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

7._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

8._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

9._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

10._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

11._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

12._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

13._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

14._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

15._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

17._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

18._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

19._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

20._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

21._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

22._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

23._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

24._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

26._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

27._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

28._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

29._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

30._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

31._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

45.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25