SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCCCTTTTGTCCCCGGCCGGCCAAGG
1._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
2._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
3._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
4._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
5._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
6._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
7._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
8._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
9._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
10._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
11._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
12._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
13._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
14._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
15._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
16._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
17._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
18._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
19._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
20._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
21._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
22._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
23._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
24._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
25._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
26._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
27._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
28._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
29._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGG__AAGG
30._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
31._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
32._GU_261_/P
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
33._RUQ_1370
CCCCCCTTTTTTCCCCGGCCGGCCAAGG
34._GU_261_/P
CCCCCCTTTTTTCCCCGGCCAGCCAAGG
35._RUQ_1370
__CCCC____TT______CCGG______
36._RUQ_1370
__CC______TT__CCGG__GG______
37._RUQ_1370
__GG______________CC__CC____
38._RUQ_1370
GGGGGGAAAAAA____GGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCCCGGGGAGCCACCCGGCCAAGGGGAA
1._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
2._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
3._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
4._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
5._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
6._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
7._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
8._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
9._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
10._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
11._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
12._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
13._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
14._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
15._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
16._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
17._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
18._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
19._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
20._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
21._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
22._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
23._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
24._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
25._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
26._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
27._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
28._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
29._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
30._GU_261_/P
CCCCGGGGAGCCACCCGGCC__GGGGAA
31._GU_261_/P
CC__GGGGAGCCACCCGGCCAAGGGGAA
32._GU_261_/P
__CCGGGGAGCCACCCGGCCAAGGGGAA
33._RUQ_1370
CCCCGGGGAACCACCCGGCCAAGGGGAA
34._GU_261_/P
CCCCGGGGAGCCACCCGGCCAAGGGGAA
35._RUQ_1370
__CCGGGG__CCACCCGGCCAAGG__AA
36._RUQ_1370
____GGGGAA__ACCC____AA______
37._RUQ_1370
__CCCC______ACCC__________AA
38._RUQ_1370
GGGGCCCC__GGACCCCC__AA__GGAA
 29 30 31 32 33 34 35 36       
_Input profile
CCGGCCACTTAAAAGGX_XX_XX_XX_XX_XX_X
1._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
2._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
3._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
4._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
5._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
6._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
7._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
8._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
9._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
10._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
11._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
12._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
13._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
14._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
15._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
16._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
17._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
18._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
19._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
20._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
21._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
22._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
23._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
24._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
25._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
26._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
27._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
28._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
29._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
30._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
31._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
32._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
33._RUQ_1370
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
34._GU_261_/P
CCGGCCAATTAAAAGGX_XX_XX_XX_XX_XX_X
35._RUQ_1370
CCGGCCAATTAA____X_XX_XX_XX_XX_XX_X
36._RUQ_1370
__GG______AA____X_XX_XX_XX_XX_XX_X
37._RUQ_1370
__GGGGAA__AA____X_XX_XX_XX_XX_XX_X
38._RUQ_1370
GGGGGGAAAAAAAAGGX_XX_XX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

1._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

2._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

3._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

4._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

5._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

6._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

7._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

8._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

9._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

10._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

11._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

12._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

13._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

14._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

15._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

16._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

17._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

18._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

19._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

20._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

21._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

22._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

23._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

24._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

25._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

26._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

27._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

28._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

29._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

30._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

31._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

33._GU_261_/P RUQ_1370

95.8 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

95.8 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P RUQ_1370

95.5 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

36._GU_261_/P RUQ_1370

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

70.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

43.5 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1144 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP929 15TcSNP917
16TcSNP891 17TcSNP872 18TcSNP723 19TcSNP645 20TcSNP619
21TcSNP591 22TcSNP577 23TcSNP560 24TcSNP534 25TcSNP529
26TcSNP469 27TcSNP429 28TcSNP372 29TcSNP242 30TcSNP230
31TcSNP226 32TcSNP193 33TcSNP150 34TcSNP144 35TcSNP32
36TcSNP25