SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
21._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
22._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
23._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
24._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
25._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
26._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGG__
27._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
28._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GU_261_/P
CC__CCCCTTTTTTCCCCAAGGCCGGCC
30._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
31._GU_261_/P
CCGGCCCCTTTTTTCCCC__GGCCGGCC
32._RUQ_1370
__GGCCCC____TT________CCGG__
33._RUQ_1370
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
34._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
35._GU_261_/P
CC__CCCCTTTTGTCCCC__GGCCGGCC
36._RUQ_1370
____CC______TT__CC__GG__GG__
37._RUQ_1370
____GG________________CC__CC
38._RUQ_1370
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCAAGG
1._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
2._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
3._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
4._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
5._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
6._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
7._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
8._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
9._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
10._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
11._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
12._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
13._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
14._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
15._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
16._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
17._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
18._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
19._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
20._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
21._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
22._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
23._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
24._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
25._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
26._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
27._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
28._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCC__GG
29._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
30._GU_261_/P
AAGG__CCGGGGAGCCACCCGGCCAAGG
31._GU_261_/P
AAGGCC__GGGGAGCCACCCGGCCAAGG
32._RUQ_1370
______CCGGGG__CCACCCGGCCAAGG
33._RUQ_1370
AAGGCCCCGGGGAACCACCCGGCCAAGG
34._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
35._GU_261_/P
AAGGCCCCGGGGAGCCACCCGGCCAAGG
36._RUQ_1370
________GGGGAA__ACCC____AA__
37._RUQ_1370
______CCCC______ACCC________
38._RUQ_1370
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
1._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
2._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
3._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
4._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
5._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
6._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
7._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
8._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
9._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
10._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
11._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
12._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
13._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
14._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
15._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
16._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
17._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
18._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
19._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
20._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
21._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
22._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
23._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
24._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
25._GU_261_/P
GGAACCGGCCAA__TTAAAAGGX_XX_XX_X
26._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
27._GU_261_/P
GGAACCGGCCAA__TTAAAAGGX_XX_XX_X
28._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
29._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
30._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
31._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
32._RUQ_1370
__AACCGGCCAATTTTAA____X_XX_XX_X
33._RUQ_1370
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
34._GU_261_/P
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
35._GU_261_/P
GGAACCGGCCAC__TTAAAAGGX_XX_XX_X
36._RUQ_1370
______GG________AA____X_XX_XX_X
37._RUQ_1370
__AA__GGGGAATT__AA____X_XX_XX_X
38._RUQ_1370
GGAAGGGGGGAAAAAAAAAAGGX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

1._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

2._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

3._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

4._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

5._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

6._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

7._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

8._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

9._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

10._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

11._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

12._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

13._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

14._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

15._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

16._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

17._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

18._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

19._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

20._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

21._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

22._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

23._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

24._GU_261_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

26._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

27._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

28._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

29._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

30._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

31._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25