SNP Profiles of GU 261   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
21._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
22._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
23._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
24._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
25._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
26._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
27._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGG__
28._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
30._GU_261_/P
CC__CCCCTTTTTTCCCCAAGGCCGGCC
31._GU_261_/P
CCGGCCCCTTTTTTCCCC__GGCCGGCC
32._RUQ_1370
__GGCCCC____TT________CCGG__
33._RUQ_1370
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
34._GU_261_/P
CCGGCCCCTTTTTTCCCCAAGGCCAGCC
35._GU_261_/P
CC__CCCCTTTTGTCCCC__GGCCGGCC
36._RUQ_1370
____CC______TT__CC__GG__GG__
37._RUQ_1370
____GG________________CC__CC
38._RUQ_1370
GGGGGGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCGGGGAGCCACCCGGCCAAGGGG
1._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
2._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
3._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
4._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
5._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
6._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
7._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
8._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
9._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
10._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
11._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
12._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
13._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
14._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
15._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
16._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
17._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
18._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
19._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
20._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
21._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
22._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
23._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
24._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
25._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
26._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
27._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
28._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
29._GU_261_/P
AAGGCCGGGGAGCCACCCGGCC__GGGG
30._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
31._GU_261_/P
AAGG__GGGGAGCCACCCGGCCAAGGGG
32._RUQ_1370
____CCGGGG__CCACCCGGCCAAGG__
33._RUQ_1370
AAGGCCGGGGAACCACCCGGCCAAGGGG
34._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
35._GU_261_/P
AAGGCCGGGGAGCCACCCGGCCAAGGGG
36._RUQ_1370
______GGGGAA__ACCC____AA____
37._RUQ_1370
____CCCC______ACCC__________
38._RUQ_1370
AAGGGGCCCC__GGACCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
14._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
15._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
16._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
17._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
18._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
19._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
20._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
21._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
22._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
23._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
24._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
25._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
26._GU_261_/P
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
27._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
28._GU_261_/P
AACCGGCCAA__TTAAAAGGX_XX_XX_XX_X
29._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
30._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
31._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
32._RUQ_1370
AACCGGCCAATTTTAA____X_XX_XX_XX_X
33._RUQ_1370
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
34._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
35._GU_261_/P
AACCGGCCAC__TTAAAAGGX_XX_XX_XX_X
36._RUQ_1370
____GG________AA____X_XX_XX_XX_X
37._RUQ_1370
AA__GGGGAATT__AA____X_XX_XX_XX_X
38._RUQ_1370
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

1._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

2._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

3._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

4._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

5._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

6._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

7._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

8._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

9._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

10._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

11._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

12._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

13._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

14._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

15._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

16._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

17._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

18._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

19._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

20._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

21._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

22._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

23._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

24._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

26._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

27._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

28._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

29._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

30._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

31._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

48.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25