SNP Profiles of GU 310 /P View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
1._GU_310_/P	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
2._GU_310_/P	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
3._GU_310_/P	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
4._GU_310_/P	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
5._RUQ_815	__	GG	GG	CC	__	__	TT	__	__	__	__	CC	AA	__
6._RUQ_815	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
7._GU_310_/P	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CC
8._RUQ_815	__	__	GG	__	__	__	TT	__	CC	__	GG	__	AA	__
9._RUQ_815	GG	GG	CC	GG	AA	AA	AA	__	__	AA	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	CC	AA	GG	GG
1._GU_310_/P	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	CC	AA	GG	GG
2._GU_310_/P	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	CC	AA	GG	GG
3._GU_310_/P	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	CC	AA	GG	GG
4._GU_310_/P	__	GG	CC	CC	GG	GG	GG	CC	CC	CC	CC	AA	GG	GG
5._RUQ_815	__	__	__	CC	GG	GG	__	CC	CC	CC	CC	AA	GG	__
6._RUQ_815	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
7._GU_310_/P	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	AG
8._RUQ_815	__	__	__	__	GG	GG	AA	__	CC	CC	__	AA	__	__
9._RUQ_815	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	__	AA	__	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
1._GU_310_/P	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
2._GU_310_/P	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
3._GU_310_/P	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
4._GU_310_/P	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
5._RUQ_815	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X	X_X	X_X
6._RUQ_815	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
7._GU_310_/P	AA	CC	GG	__	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
8._RUQ_815	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X	X_X	X_X
9._RUQ_815	AA	GG	GG	GG	AA	AA	AA	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: GU_310_/P

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Mars Center for Cocoa Science, Brazil

Location: 8840 5

Dapeng Zhang, 2016

1._GU_310_/P

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8840 4

Dapeng Zhang, 2016

2._GU_310_/P

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8840 3

Dapeng Zhang, 2016

3._GU_310_/P

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8840 1

Dapeng Zhang, 2016

4._GU_310_/P

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8840 2

Dapeng Zhang, 2016

5._GU_310_/P RUQ_815

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._GU_310_/P RUQ_815

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._GU_310_/P

95.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X1 Y33

Dapeng Zhang, 2016

8._GU_310_/P RUQ_815

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.998

9._GU_310_/P RUQ_815

48.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25