SNP Profiles of ICS 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGCTTTAAGTCTCTAAAACTAACTAAGG
1._ICS_40___
GGCTTTAAGTCTCTAAAACTAACTAAGG
2._ICS_40___
CGCT____GT________CTAA______
3._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
4._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
5._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
6._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
7._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
8._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
9._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
10._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
11._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
12._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
13._ICS_40___
CGCTCTAAGTCTCTAAAACTAACTAAGG
14._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
15._ICS_40___
CGCTTTAAGTCTCTAAAACTAA__AAGG
16._ICS_40___
CGCTTTAA__CTCTAAAACTAACTAAGG
17._ICS_40___
CGCTTTAA__CTCTAAAACTAACTAAGG
18._ICS_40___
CGCTTTAAGTCTCTAAAACTAA__AAGG
19._ICS_40___
CGCTTTAAGTCTCTAAAACTAACTAAGG
20._ICS_40___
CG______GT__CT__AA__AA______
21._ICS_40___
GGTTCTACGTCCCCAAGGCCAACTAACG
22._ICS_40___
CCTTCTACGGTTCCAAGGCCAACTATGG
23._ICS_40___
CCTTCTACGGTTCCAAGGCCAACTATGG
24._ICS_40___
CCAGAAAAAA____AAAAAGAAAGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTCCCGGTAGCTCCGTCTCCAGGGCTAG
1._ICS_40___
TTCCCGGTAGCTCCGTCTCCAGGGCTAG
2._ICS_40___
__CCCGGT__CTCCGTCTCCAG__CTAG
3._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
4._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
5._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
6._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
7._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
8._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
9._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
10._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
11._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
12._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
13._ICS_40___
TTCCCGGTAGCTCCGTCTCCAGGGCTAG
14._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
15._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
16._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
17._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
18._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
19._ICS_40___
TTCCCGGTGGCTCCGTCTCCAGGGCTAG
20._ICS_40___
____CGGTAG__CC____CC______AG
21._ICS_40___
CTCCCGGGAACTCCTTCTACAAAGTTAA
22._ICS_40___
CTTTCCGTAATTGGGGCCAAAGAACCAG
23._ICS_40___
CTTTCCGTAATTGGGGCCAAAGAACCAG
24._ICS_40___
AAGGCGAC__AGCCAC__CC__GGAGAG
 29 30 31 32 33          
_Input profile
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._ICS_40___
ACGTAC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
3._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._ICS_40___
__GTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._ICS_40___
ACGTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._ICS_40___
__GTACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._ICS_40___
____AC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
21._ICS_40___
ACGTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._ICS_40___
CCGGACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._ICS_40___
CCGGACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._ICS_40___
ACACACATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: ICS_40

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

1._ICS_40

identical
33 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0201 2A
 Dapeng Zhang, 2016

2._ICS_40 RUQ_1432

97.4 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._ICS_40

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 1
 Dapeng Zhang, 2016

4._ICS_40 GC-01-106-6-03

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

5._ICS_40 GC-01-106-6-03

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

6._ICS_40 GC-01-106-6-03

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._ICS_40 GC-01-106-6-03

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._ICS_40 GC-01-106-6-03

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._ICS_40

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4
 Dapeng Zhang, 2016

10._ICS_40

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6
 Dapeng Zhang, 2016

11._ICS_40

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 11
 Dapeng Zhang, 2016

12._ICS_40

97 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 13
 Dapeng Zhang, 2016

13._ICS_40 RUQ_1432

97 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_40 GC-01-106-6-03

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

15._ICS_40 GC-01-106-6-03

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

16._ICS_40 GC-01-106-6-03

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._ICS_40

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 16
 Dapeng Zhang, 2016

18._ICS_40

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4 > FP
 Dapeng Zhang, 2016

19._ICS_40

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6 > FP
 Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._ICS_40

68.2 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E287 T4
 Dapeng Zhang, 2016

22._ICS_40 GC-01-106-6-03

56.1 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._ICS_40

56.1 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 9
 Dapeng Zhang, 2016

24._ICS_40 RUQ_1432

53.6 %
28 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1442 3TcSNP1414 4TcSNP1350 5TcSNP1253
6TcSNP1165 7TcSNP1144 8TcSNP1075 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP929 15TcSNP917
16TcSNP891 17TcSNP872 18TcSNP723 19TcSNP645 20TcSNP619
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP242 28TcSNP230 29TcSNP193 30TcSNP150
31TcSNP144 32TcSNP32 33TcSNP25