SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
2._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
3._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
6._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._ICS_40___
CTAGCGCTTTAACC__CTCTAAAACTAA
13._ICS_40___
CTAGCGCTTTAACC__CTCTAAAACTAA
14._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
15._ICS_40___
CTAGCGCTTTAACCGTCTCTAAAACTAA
16._ICS_40___
__AGCGCT______GT________CTAA
17._ICS_40___
CTAGCGCTCTAACCGTCTCTAAAACTAA
18._ICS_40___
CTAGGGCTTTAACCGTCTCTAAAACTAA
19._ICS_40___
____GGCTTTAA__GTCTCTAAAACTAA
20._ICS_40___
____CG________GT__CT__AA__AA
21._ICS_40___
CCGGGGTTCTACCTGTCCCCAAGGCCAA
22._ICS_40___
CCGGCCTTCTACCTGGTTCCAAGGCCAA
23._ICS_40___
CCGGCCTTCTACCTGGTTCCAAGGCCAA
24._ICS_40___
AGAGCCAGAAAAGGAA____AAAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
2._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
3._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
4._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
5._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
6._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
7._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
8._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
9._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
10._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
11._ICS_40___
__AAGGTTCCCGGTGGCTACCCGTCTCC
12._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
13._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
14._ICS_40___
__AAGGTTCCCGGTGGCTACCCGTCTCC
15._ICS_40___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
16._ICS_40___
________CCCGGT__CTAACCGTCTCC
17._ICS_40___
CTAAGGTTCCCGGTAGCTACCCGTCTCC
18._ICS_40___
CTAAGGTTCCCGGTAGCTACCCGTCTCC
19._ICS_40___
CTAAGGTTCCCGGTAGCT__CCGTCTCC
20._ICS_40___
__________CGGTAG__ACCC____CC
21._ICS_40___
CTAACGCTCCCGGGAACTCCCCTTCTAC
22._ICS_40___
CTATGGCTTTCCGTAATTCCGGGGCCAA
23._ICS_40___
CTATGGCTTTCCGTAATTCCGGGGCCAA
24._ICS_40___
AGAAGGAAGGCGAC__AGACCCAC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
2._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
3._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
4._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
5._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
6._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
7._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
8._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
9._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
10._ICS_40___
AGGGATCTAGCG__CTGTACATGGX_XX_X
11._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
12._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
13._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
14._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
15._ICS_40___
AGGGATCTAGCG__CTGTACATGGX_XX_X
16._ICS_40___
AG__ATCTAGCGACCTGTAC____X_XX_X
17._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
18._ICS_40___
AGGGATCTAGCGACCTGTACATGGX_XX_X
19._ICS_40___
AGGG__CTAG__AC__GTACATGGX_XX_X
20._ICS_40___
________AG________AC____X_XX_X
21._ICS_40___
AAAGAATTAAGGACCCGTCCTTCGX_XX_X
22._ICS_40___
AGAAATCCAGCCCCTTGGACATGGX_XX_X
23._ICS_40___
AGAAATCCAGCCCCTTGGACATGGX_XX_X
24._ICS_40___
__GGATAGAGCGACAGACACATGGX_XX_X

Input profile: ICS_40

 
Mars Center for Cocoa Science, Brazil
Location: 1603 4
 Dapeng Zhang, 2016

1._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 1
 Dapeng Zhang, 2016

2._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

4._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

5._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6
 Dapeng Zhang, 2016

7._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 11
 Dapeng Zhang, 2016

8._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 13
 Dapeng Zhang, 2016

9._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._ICS_40 GC-01-106-6-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

11._ICS_40 GC-01-106-6-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

12._ICS_40 GC-01-106-6-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 16
 Dapeng Zhang, 2016

14._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4 > FP
 Dapeng Zhang, 2016

15._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6 > FP
 Dapeng Zhang, 2016

16._ICS_40 RUQ_1432

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_40 RUQ_1432

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_40

97.5 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0201 2A
 Dapeng Zhang, 2016

19._ICS_40

97 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._ICS_40

62.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E287 T4
 Dapeng Zhang, 2016

22._ICS_40 GC-01-106-6-03

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._ICS_40

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 9
 Dapeng Zhang, 2016

24._ICS_40 RUQ_1432

55.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25