SNP Profiles of ICS 95   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCTTTAACCGTCTATAACTAACT
1._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
2._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
3._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
4._ICS_48___
CTAGGGCTTTAACCGTCTAAAACTAACT
5._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
6._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
7._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
8._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
9._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
10._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
11._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
12._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
13._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
14._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
15._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
16._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
17._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
18._ICS_48___
CTAGCGCTTTAACCGTCTAAAACTAACT
19._ICS_48___
____CG________GT____AA__AA__
20._ICS_48___
__AGCGCT______GT______CTAA__
21._ICS_48___
TTAAGGCTTTAACCTTCCAAAACCAATT
22._ICS_48___
TTAAGGCTTTAACCTTCCAAAACCAATT
23._ICS_48___
AGAGCCAGAAAAGGAA__AAAAAGAAAG
24._ICS_48___
AGAGCGAGAGACAGAC__ATAGGGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGTTCCCGTTAGCTACCGGTCTCCAG
1._ICS_48___
AAGGTTCCCGTTAGCTACCGGTCTCCAG
2._ICS_48___
AAGGTTCCCGTTAGCTACCGGTCTCCAG
3._ICS_48___
AAGGTTCCCGTTAGCTACCGGTCTCCAG
4._ICS_48___
AACGTTCCCGTTAGCTACCGGTCTCCAG
5._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
6._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
7._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
8._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
9._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
10._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
11._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
12._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
13._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
14._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
15._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
16._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
17._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
18._ICS_48___
AAGGTTCCCGTT__CTACCGGTCTCCAG
19._ICS_48___
________CGTTAG__ACCG____CC__
20._ICS_48___
______CCCGTT__CTAAGGGTCTCCAG
21._ICS_48___
AAGGTTCCGGGTGGTTCCCGTTTTCCAA
22._ICS_48___
AAGGTTCCGGGTGGTTCCCGTTTTCCAA
23._ICS_48___
AAGGAAGGCGAA__AGACCGAC__CC__
24._ICS_48___
ATGGAGGGCCCC__AAACCCAC__AC__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
1._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
2._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
3._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
4._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
5._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
6._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
7._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
8._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
9._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
10._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
11._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
12._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
13._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
14._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
15._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
16._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
17._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
18._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
19._ICS_48___
______AG______AC____X_XX_XX_XX_X
20._ICS_48___
__ATCTAGACCTGTAC____X_XX_XX_XX_X
21._ICS_48___
GGAACTAGAACCTTCCTTGGX_XX_XX_XX_X
22._ICS_48___
GGAACTAGAACCTTCCTTGGX_XX_XX_XX_X
23._ICS_48___
GGATAGAGACAGACACATGGX_XX_XX_XX_X
24._ICS_48___
GGATAGAAACAGACCCATGGX_XX_XX_XX_X

Input profile: ICS_48

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

1._ICS_48 GC-05-120-3-22

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

2._ICS_48

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

3._ICS_48 RUQ_146

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._ICS_48

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

5._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

6._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._ICS_48 GC-05-120-3-22

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._ICS_48 GC-05-120-3-22

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

12._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016

13._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

14._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

15._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

16._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

17._ICS_48

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

18._ICS_48 GC-05-120-3-22

97.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._ICS_48 RUQ_146

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._ICS_48 RUQ_146

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._ICS_48 GC-05-078-2-29

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

22._ICS_48

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

23._ICS_48 RUQ_146

51.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_48 ICS_48_Fld#_105_Plt#_2

41.2 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25