SNP Profiles of ICS 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
2._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
3._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
6._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
13._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
14._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
15._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
16._ICS_48___
CTAGCGCTTTAACCGTCTCTAAAACTAA
17._ICS_48___
____CG________GT__CT__AA__AA
18._ICS_48___
CTAGGGCTTTAACCGTCT__ATAACTAA
19._ICS_48___
CTAGGGCTTTAACCGTCTCTAAAACTAA
20._ICS_48___
__AGCGCT______GT________CTAA
21._ICS_48___
TTAAGGCTTTAACCTTCCTTAAAACCAA
22._ICS_48___
TTAAGGCTTTAACCTTCCTTAAAACCAA
23._ICS_48___
AGAGCCAGAAAAGGAA____AAAAAGAA
24._ICS_48___
AGAGCGAGAGACAGAC____ATAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCCGTTCTACCGGTCTCCAG
1._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
2._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
3._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
4._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
5._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
6._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
7._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
8._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
9._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
10._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
11._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
12._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
13._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
14._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
15._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
16._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
17._ICS_48___
__________CGTT__ACCG____CC__
18._ICS_48___
CTAAGGTTCCCGTTCTACCGGTCTCCAG
19._ICS_48___
CTAACGTTCCCGTTCTACCGGTCTCCAG
20._ICS_48___
________CCCGTTCTAAGGGTCTCCAG
21._ICS_48___
TTAAGGTTCCGGGTTTCCCGTTTTCCAA
22._ICS_48___
TTAAGGTTCCGGGTTTCCCGTTTTCCAA
23._ICS_48___
AGAAGGAAGGCGAAAGACCGAC__CC__
24._ICS_48___
AGATGGAGGGCCCCAAACCCAC__AC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGATCTAGCGACCTGTACATGGX_XX_XX_X
1._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
2._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
3._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
4._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
5._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
6._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
7._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
8._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
9._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
10._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
11._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
12._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
13._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
14._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
15._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
16._ICS_48___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
17._ICS_48___
______AG________AC____X_XX_XX_X
18._ICS_48___
GGATCTAG__ACCTGTACATGGX_XX_XX_X
19._ICS_48___
GGATCTAGGGACCTGTACATGGX_XX_XX_X
20._ICS_48___
__ATCTAGCGACCTGTAC____X_XX_XX_X
21._ICS_48___
GGAACTAGCCAACCTTCCTTGGX_XX_XX_X
22._ICS_48___
GGAACTAGCCAACCTTCCTTGGX_XX_XX_X
23._ICS_48___
GGATAGAGCGACAGACACATGGX_XX_XX_X
24._ICS_48___
GGATAGAAGGACAGACCCATGGX_XX_XX_X

Input profile: ICS_48

 
Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

1._ICS_48 GC-05-120-3-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._ICS_48 GC-05-120-3-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._ICS_48 GC-05-120-3-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._ICS_48 GC-05-120-3-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._ICS_48 GC-05-078-2-29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._ICS_48 GC-05-078-2-29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._ICS_48 GC-05-078-2-29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._ICS_48 GC-05-078-2-29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016

10._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

11._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

12._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

13._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

14._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

15._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

16._ICS_48 RUQ_146

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_48 RUQ_146

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._ICS_48

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

19._ICS_48

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

20._ICS_48 RUQ_146

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._ICS_48 GC-05-078-2-29

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

22._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

23._ICS_48 RUQ_146

55.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_48 ICS_48_Fld#_105_Plt#_2

41.4 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25