SNP Profiles of ICS 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
2._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
3._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
4._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
5._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
6._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._RUQ_146	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
17._RUQ_146	__	__	CG	__	__	__	__	GT	__	CT	__	AA	__	AA
18._ICS_48	CT	AG	GG	CT	TT	AA	CC	GT	CT	__	AT	AA	CT	AA
19._ICS_48	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
20._RUQ_146	__	AG	CG	CT	__	__	__	GT	__	__	__	__	CT	AA
21._GC-05-078-2-29	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CC	AA
22._ICS_48	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CC	AA
23._RUQ_146	AG	AG	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AG	AA
24._ICS_48_Fld#_105_Plt#_2	AG	AG	CG	AG	AG	AC	AG	AC	__	__	AT	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
1._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
2._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
3._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
4._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
5._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
6._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
7._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
8._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
9._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
10._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
11._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
12._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
13._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
14._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
15._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
16._RUQ_146	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
17._RUQ_146	__	__	__	__	__	CG	TT	__	AC	CG	__	__	CC	__
18._ICS_48	CT	AA	GG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
19._ICS_48	CT	AA	CG	TT	CC	CG	TT	CT	AC	CG	GT	CT	CC	AG
20._RUQ_146	__	__	__	__	CC	CG	TT	CT	AA	GG	GT	CT	CC	AG
21._GC-05-078-2-29	TT	AA	GG	TT	CC	GG	GT	TT	CC	CG	TT	TT	CC	AA
22._ICS_48	TT	AA	GG	TT	CC	GG	GT	TT	CC	CG	TT	TT	CC	AA
23._RUQ_146	AG	AA	GG	AA	GG	CG	AA	AG	AC	CG	AC	__	CC	__
24._ICS_48_Fld#_105_Plt#_2	AG	AT	GG	AG	GG	CC	CC	AA	AC	CC	AC	__	AC	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
1._GC-05-120-3-22	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
2._GC-05-120-3-22	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
3._GC-05-120-3-22	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
4._GC-05-120-3-22	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
5._GC-05-078-2-29	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
6._GC-05-078-2-29	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
7._GC-05-078-2-29	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
8._GC-05-078-2-29	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
9._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
10._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
11._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
12._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
13._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
14._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
15._ICS_48	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
16._RUQ_146	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
17._RUQ_146	__	__	__	AG	__	__	__	__	AC	__	__	X_X	X_X	X_X
18._ICS_48	GG	AT	CT	AG	__	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
19._ICS_48	GG	AT	CT	AG	GG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
20._RUQ_146	__	AT	CT	AG	CG	AC	CT	GT	AC	__	__	X_X	X_X	X_X
21._GC-05-078-2-29	GG	AA	CT	AG	CC	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X
22._ICS_48	GG	AA	CT	AG	CC	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X
23._RUQ_146	GG	AT	AG	AG	CG	AC	AG	AC	AC	AT	GG	X_X	X_X	X_X
24._ICS_48_Fld#_105_Plt#_2	GG	AT	AG	AA	GG	AC	AG	AC	CC	AT	GG	X_X	X_X	X_X

Input profile: ICS_48

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Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

1._ICS_48 GC-05-120-3-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._ICS_48 GC-05-120-3-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

3._ICS_48 GC-05-120-3-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

4._ICS_48 GC-05-120-3-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._ICS_48 GC-05-078-2-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._ICS_48 GC-05-078-2-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._ICS_48 GC-05-078-2-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._ICS_48 GC-05-078-2-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

10._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

11._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

12._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

13._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

14._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

15._ICS_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

16._ICS_48 RUQ_146

identical
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_48 RUQ_146

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.475 Cri
0.519

18._ICS_48

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

19._ICS_48

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

20._ICS_48 RUQ_146

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

21._ICS_48 GC-05-078-2-29

71.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

22._ICS_48

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

23._ICS_48 RUQ_146

55.7 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

24._ICS_48 ICS_48_Fld#_105_Plt#_2

41.4 %
35 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 105, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25