SNP Profiles of ICS 6 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	TT	TT	AA	CC	TT	CC	TT	AA	CC	AA	CT
1._RUQ_721	__	__	CG	__	__	__	__	TT	__	__	AA	__	AA	__
2._RUQ_721	__	AA	CG	TT	__	__	__	TT	__	__	__	CC	AA	__
3._RUQ_721	__	AG	CG	TT	CT	AA	CC	TT	CC	AA	AA	CC	AA	CT
4._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
5._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
6._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
7._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
8._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
9._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
10._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
11._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
12._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
13._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
14._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
15._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
16._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
17._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
18._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	__	GT	CT	AA	AA	CT	AA	CT
19._ICS_6	CT	AG	CG	CT	TT	AA	__	GT	CT	AA	AA	CT	AA	CT
20._RUQ_721	AA	AA	CC	AA	AA	AA	GG	AA	__	AA	AA	GG	AA	AG
21._GC-08-49-1-60	AG	AG	CC	AG	AA	AA	GG	AA	__	AA	AA	AG	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	TT	CT	CC	AA
1._RUQ_721	__	__	__	__	CC	GG	AG	__	AC	CC	__	__	CC	__
2._RUQ_721	__	__	__	CC	CC	GG	__	CT	AA	CC	TT	CT	CC	AA
3._RUQ_721	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	TT	CT	CC	AA
4._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
5._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
6._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
7._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
8._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
9._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
10._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
11._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
12._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
13._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
14._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
15._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
16._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
17._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
18._GC-08-049-1-60	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
19._ICS_6	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC	AG
20._RUQ_721	AA	GG	AA	GG	GG	CC	__	AG	AC	CC	AA	__	CC	__
21._GC-08-49-1-60	AA	GG	AA	GG	CG	AC	__	AG	AC	CC	AC	__	CC	__

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AT	CC	GG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
1._RUQ_721	__	__	__	GG	__	__	__	CC	__	__	X_X	X_X	X_X	X_X
2._RUQ_721	__	AT	CC	GG	AA	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
3._RUQ_721	GG	AT	CC	GG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
4._GC-08-049-1-60	GG	AT	CT	__	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
5._ICS_6	GG	AT	CT	__	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
6._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
7._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
8._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
9._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
10._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
11._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
12._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
13._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
14._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
15._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
16._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
17._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
18._GC-08-049-1-60	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
19._ICS_6	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
20._RUQ_721	GG	AT	GG	GG	AA	GG	AC	CC	AT	GG	X_X	X_X	X_X	X_X
21._GC-08-49-1-60	GG	AT	AG	AG	AC	AG	AC	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: ICS_6

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

1._ICS_6 RUQ_721

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.696 Cri
0.299

2._ICS_6 RUQ_721

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_6 RUQ_721

93.2 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._ICS_6 GC-08-049-1-60

75.7 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._ICS_6

75.7 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 6

Dapeng Zhang, 2016

6._ICS_6

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 1

Dapeng Zhang, 2016

7._ICS_6 GC-08-049-1-60

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

8._ICS_6 GC-08-049-1-60

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._ICS_6 GC-08-049-1-60

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._ICS_6 GC-08-049-1-60

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._ICS_6 GC-08-049-1-60

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

12._ICS_6 GC-08-049-1-60

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

13._ICS_6

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 5

Dapeng Zhang, 2016

14._ICS_6

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 8

Dapeng Zhang, 2016

15._ICS_6

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 9

Dapeng Zhang, 2016

16._ICS_6

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 11

Dapeng Zhang, 2016

17._ICS_6

75 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 2 > FP

Dapeng Zhang, 2016

18._ICS_6 GC-08-049-1-60

74.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._ICS_6

74.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 4

Dapeng Zhang, 2016

20._ICS_6 RUQ_721

47.1 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._ICS_6 GC-08-49-1-60

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2

Notes: Brazil_Selections_Poss_grandparent

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25