SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTTTAAGTCTCTAAAACTAACT
1._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
2._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
3._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
4._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
5._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
6._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
7._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
8._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
9._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
10._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
11._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
12._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
13._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
14._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
15._ICS_6___
CTAGCGCTTTAAGTCTCTAAAACTAACT
16._ICS_6___
__AGCGTTCTAATTCCCTAAAACCAACT
17._ICS_6___
TTAAGGTTTTAATTCC__TTAACCAACT
18._ICS_6___
____CG______TT__TT__AA__AA__
19._ICS_6___
__AACGTT____TT________CCAA__
20._ICS_6___
AGAGCCAGAAAAAA____AAAAAGAAAG
21._ICS_6___
AAAACCAAAAAAAA____AAAAGGAAAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGTTCCCGGTGGCTACCCGTCTCCAG
1._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
2._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
3._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
4._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
5._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
6._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
7._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
8._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
9._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
10._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
11._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
12._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
13._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
14._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
15._ICS_6___
AAGGTTCCCGGTGGCTACCCGTCTCCAG
16._ICS_6___
AAGGTTCCCCGGAGCTACCCTTCTCCAA
17._ICS_6___
AAGGTTCCCCGGAGCTACCCTTCTCCAA
18._ICS_6___
________CCGGAG__ACCC____CC__
19._ICS_6___
______CCCCGG__CTAACCTTCTCCAA
20._ICS_6___
AAGGAAGGCGAC__AGACCCAC__CC__
21._ICS_6___
AAGGAAGGGGCC__AGACCCAA__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGATCTAGCGACCTGTACATGGX_XX_XX_X
1._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
2._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
3._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
4._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
5._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
6._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
7._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
8._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
9._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
10._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
11._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
12._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
13._ICS_6___
GGATCTAGCGACCTGTACATGGX_XX_XX_X
14._ICS_6___
GGATCT__CGACCTGTACATGGX_XX_XX_X
15._ICS_6___
GGATCT__CGACCTGTACATGGX_XX_XX_X
16._ICS_6___
GGATCCGGCCAACCGTCCATGGX_XX_XX_X
17._ICS_6___
GGATCCGG__AACCGTCCATGGX_XX_XX_X
18._ICS_6___
______GG________CC____X_XX_XX_X
19._ICS_6___
__ATCCGGCCAACCGTCC____X_XX_XX_X
20._ICS_6___
GGATAGAGCGACAGACACATGGX_XX_XX_X
21._ICS_6___
GGATGGGGGGAAGGACCCATGGX_XX_XX_X

Input profile: ICS_6

 
Mars Center for Cocoa Science, Brazil
Location: 8160 4
 Dapeng Zhang, 2016

1._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 1
 Dapeng Zhang, 2016

9._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 5
 Dapeng Zhang, 2016

10._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 8
 Dapeng Zhang, 2016

11._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 9
 Dapeng Zhang, 2016

12._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 11
 Dapeng Zhang, 2016

13._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 2 > FP
 Dapeng Zhang, 2016

14._ICS_6 GC-08-049-1-60

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._ICS_6

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 6
 Dapeng Zhang, 2016

16._ICS_6 RUQ_721

78.9 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_6

74.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E281 T2
 Dapeng Zhang, 2016

18._ICS_6 RUQ_721

73.1 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._ICS_6 RUQ_721

68.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._ICS_6 GC-08-49-1-60

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._ICS_6 RUQ_721

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25