SNP Profiles of ICS 6   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
2._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
3._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
6._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
13._ICS_6___
CTAGCGCTTTAA__GTCTCTAAAACTAA
14._ICS_6___
CTAGCGCTTTAA__GTCTCTAAAACTAA
15._ICS_6___
CTAGCGCTTTAACCGTCTCTAAAACTAA
16._ICS_6___
__AGCGTTCTAACCTTCCCTAAAACCAA
17._ICS_6___
TTAAGGTTTTAACCTTCC__TTAACCAA
18._ICS_6___
____CG________TT__TT__AA__AA
19._ICS_6___
__AACGTT______TT________CCAA
20._ICS_6___
AGAGCCAGAAAAGGAA____AAAAAGAA
21._ICS_6___
AAAACCAAAAAAGGAA____AAAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
2._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
3._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
4._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
5._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
6._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
7._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
8._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
9._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
10._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
11._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
12._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
13._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
14._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
15._ICS_6___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
16._ICS_6___
CTAAGGTTCCCCGGAGCTACCCTTCTCC
17._ICS_6___
CTAAGGTTCCCCGGAGCTACCCTTCTCC
18._ICS_6___
__________CCGGAG__ACCC____CC
19._ICS_6___
________CCCCGG__CTAACCTTCTCC
20._ICS_6___
AGAAGGAAGGCGAC__AGACCCAC__CC
21._ICS_6___
AGAAGGAAGGGGCC__AGACCCAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
2._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
3._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
4._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
5._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
6._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
7._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
8._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
9._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
10._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
11._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
12._ICS_6___
AGGGATCT__CGACCTGTACATGGX_XX_X
13._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
14._ICS_6___
AGGGATCTAGCGACCTGTACATGGX_XX_X
15._ICS_6___
AGGGATCT__CGACCTGTACATGGX_XX_X
16._ICS_6___
AAGGATCCGGCCAACCGTCCATGGX_XX_X
17._ICS_6___
AAGGATCCGG__AACCGTCCATGGX_XX_X
18._ICS_6___
________GG________CC____X_XX_X
19._ICS_6___
AA__ATCCGGCCAACCGTCC____X_XX_X
20._ICS_6___
__GGATAGAGCGACAGACACATGGX_XX_X
21._ICS_6___
__GGATGGGGGGAAGGACCCATGGX_XX_X

Input profile: ICS_6

 
Mars Center for Cocoa Science, Brazil
Location: 8160 5
 Dapeng Zhang, 2016

1._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

4._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 1
 Dapeng Zhang, 2016

8._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 8
 Dapeng Zhang, 2016

9._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 9
 Dapeng Zhang, 2016

10._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 11
 Dapeng Zhang, 2016

11._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 2 > FP
 Dapeng Zhang, 2016

12._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 4
 Dapeng Zhang, 2016

15._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 6
 Dapeng Zhang, 2016

16._ICS_6 RUQ_721

79.5 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_6

75 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E281 T2
 Dapeng Zhang, 2016

18._ICS_6 RUQ_721

73.1 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._ICS_6 RUQ_721

68.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._ICS_6 GC-08-49-1-60

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._ICS_6 RUQ_721

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25