SNP Profiles of JA 9 /37 [POU]   View Data

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 Key

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_Input profile
TTAAGGCCTTCCTTCCTTAAAACCGGTT
1._JA_9_/37_[POU]
TTAAGGCCTTCCTTCCTTAAAACCGGTT
2._JA_9_/37_[POU]
TTAAGGCCTTCCTTCCTTAAAACCGGTT
3._JA_9_/37_[POU]
TTAAGGCCTTCCTTCCTTAAAACCGGTT
4._GC-08-071-1-93
TTAAGGCCTTCCTTCCTTAAAACCGGTT
5._GC-08-071-1-93
TTAAGGCCTTCCTTCCTTAAAACCGGTT
6._GC-08-071-1-93
TTAAGGCCTTCCTTCCTTAAAACCGGTT
7._GC-08-071-1-93
TTAAGGCCTTCCTTCCTTAAAACCGGTT
8._JA_9_/37_[POU]
TTAAGGCCTTCCGTCCTTAAAACCAGTT
9._JA_9_/37_[POU]
CTGGGGCTCTCCGTCTCTAAAGCTAGCT
10._GC-08-071-1-93
CTGGGGCTCTCCGTCTCTAAAGCTAGCT
11._GC-08-71-1-93
AAAACCGGAAGGAA____AAAAGGGGAA
 1516171819202122232425262728
_Input profile
AACCTTCCGGGGGGTTAACCTTTTCCAA
1._JA_9_/37_[POU]
AACCTTCCGGGGGGTTAACCTTTTCCAA
2._JA_9_/37_[POU]
AACCTTCCGGGGGGTTAACCTTTTCCAA
3._JA_9_/37_[POU]
AACCTTCCGGGGGGTTAACCTTTTCCAA
4._GC-08-071-1-93
AACCTTCCGGGGGGTTAACCTTTTCCAA
5._GC-08-071-1-93
AACCTTCCGGGGGGTTAACCTTTTCCAA
6._GC-08-071-1-93
AACCTTCCGGGGGGTTAACCTTTTCCAA
7._GC-08-071-1-93
AACCTTCCGGGGGGTTAACCTTTTCCAA
8._JA_9_/37_[POU]
AAGGTTCCGGGGAACTCCCCTTTTCCAA
9._JA_9_/37_[POU]
ATCCTTCTCGGTGGTTAACCGTTTCCAG
10._GC-08-071-1-93
ATCCTTCTCGGTGGTTAACCGTTTCCAG
11._GC-08-71-1-93
AACCAAGGCCCC__AAAACCAA__CC__
 2930313233343536373839   
_Input profile
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
1._JA_9_/37_[POU]
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
2._JA_9_/37_[POU]
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
3._JA_9_/37_[POU]
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
4._GC-08-071-1-93
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
5._GC-08-071-1-93
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
6._GC-08-071-1-93
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
7._GC-08-071-1-93
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
8._JA_9_/37_[POU]
GGAACCAGCCACCTTTCCTTGGX_XX_XX_X
9._JA_9_/37_[POU]
GGAACTAGCCACCTGTACATCGX_XX_XX_X
10._GC-08-071-1-93
GGAACTAGCCACCTGTACATCGX_XX_XX_X
11._GC-08-71-1-93
GGAAGGAAGGAAGGAACCTTGGX_XX_XX_X

Input profile: JA_9_/37_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

1._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

2._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

3._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._JA_9_/37_[POU] GC-08-071-1-93

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._JA_9_/37_[POU] GC-08-071-1-93

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._JA_9_/37_[POU] GC-08-071-1-93

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

7._JA_9_/37_[POU] GC-08-071-1-93

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._JA_9_/37_[POU]

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

9._JA_9_/37_[POU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._JA_9_/37_[POU] GC-08-071-1-93

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._JA_9_/37_[POU] GC-08-71-1-93

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25