SNP Profiles of LCT EEN 46 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
1._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
2._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
3._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
4._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
5._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
6._LCT_EEN_46	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
7._LCT_EEN_46	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
8._LCT_EEN_46	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
9._LCT_EEN_46	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
10._LCT_EEN_46	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
11._LCT_EEN_46	TT	AG	CG	TT	CC	CT	CT	CC	TT	GG	CT	AA	TT	AA
12._GC-03-033-3-12	CC	GG	CC	TT	CT	CT	TT	CC	AA	GG	CC	AA	CT	AT
13._LCT_EEN_46	CC	GG	CC	TT	CT	CT	TT	CC	AA	GG	CC	AA	CT	AT
14._GC-03-033-3-12	CC	GG	CC	TT	CT	CT	TT	CC	AA	GG	CC	AA	CT	AT
15._LCT_EEN_46	CC	GG	CC	TT	CT	CT	TT	CC	AA	GG	CC	AA	CT	AT
16._GC-03-033-3-12	CT	AG	GG	CC	TT	CC	CC	CT	AA	AA	CC	AG	TT	AT
17._LCT_EEN_46	CT	AG	GG	CC	TT	CC	CC	CT	AA	AA	CC	AG	TT	AT
18._MITC-000412	AA	AA	CC	GG	AA	GG	__	__	AA	AA	GG	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
1._GC-03-033-3-12	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
2._GC-03-033-3-12	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
3._GC-03-033-3-12	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
4._GC-03-033-3-12	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
5._GC-03-033-3-12	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
6._LCT_EEN_46	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
7._LCT_EEN_46	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
8._LCT_EEN_46	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
9._LCT_EEN_46	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG	AG
10._LCT_EEN_46	GG	CT	CT	GG	GG	AG	TT	CC	CC	GT	CT	AA	AG	AG
11._LCT_EEN_46	GG	CT	CT	GG	GG	AG	TT	CC	CC	GT	CT	AA	AG	AG
12._GC-03-033-3-12	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG	AA
13._LCT_EEN_46	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG	AA
14._GC-03-033-3-12	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG	AA
15._LCT_EEN_46	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG	AA
16._GC-03-033-3-12	GG	CT	CC	GG	GG	AG	TT	AC	CC	GT	TT	CC	AG	GG
17._LCT_EEN_46	GG	CT	CC	GG	GG	AG	TT	AC	CC	GT	TT	CC	AG	GG
18._MITC-000412	GG	AA	GG	CC	CC	__	AA	AA	CC	AA	__	CC	__	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
1._GC-03-033-3-12	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
2._GC-03-033-3-12	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
3._GC-03-033-3-12	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
4._GC-03-033-3-12	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
5._GC-03-033-3-12	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
6._LCT_EEN_46	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
7._LCT_EEN_46	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
8._LCT_EEN_46	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
9._LCT_EEN_46	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
10._LCT_EEN_46	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
11._LCT_EEN_46	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X	X_X
12._GC-03-033-3-12	AT	CC	AG	CC	CC	TT	GG	AC	AT	GG	X_X	X_X	X_X	X_X
13._LCT_EEN_46	AT	CC	AG	CC	CC	TT	GG	AC	AT	GG	X_X	X_X	X_X	X_X
14._GC-03-033-3-12	AT	CC	AG	CC	CC	TT	GG	__	AT	GG	X_X	X_X	X_X	X_X
15._LCT_EEN_46	AT	CC	AG	CC	CC	TT	GG	__	AT	GG	X_X	X_X	X_X	X_X
16._GC-03-033-3-12	AA	CC	AA	CC	AC	CT	GT	AA	TT	GG	X_X	X_X	X_X	X_X
17._LCT_EEN_46	AA	CC	AA	CC	AC	CT	GT	AA	TT	GG	X_X	X_X	X_X	X_X
18._MITC-000412	AA	GG	AA	GG	AA	GG	AA	CC	TT	GG	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_46

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Mars Center for Cocoa Science, Brazil

Location: 3312 2

Dapeng Zhang, 2016

1._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

2._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

6._LCT_EEN_46

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 7

Dapeng Zhang, 2016

7._LCT_EEN_46

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 9

Dapeng Zhang, 2016

8._LCT_EEN_46

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 10

Dapeng Zhang, 2016

9._LCT_EEN_46

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 1 > FP

Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 478

Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 17 T1

Dapeng Zhang, 2016

12._LCT_EEN_46 GC-03-033-3-12

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

13._LCT_EEN_46

63.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 5 > FP

Dapeng Zhang, 2016

14._LCT_EEN_46 GC-03-033-3-12

62.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

15._LCT_EEN_46

62.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 4 > FP

Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

57.9 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

17._LCT_EEN_46

57.9 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 6

Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

19.7 %
33 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1165	8	TcSNP1144	9	TcSNP1075	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25