SNP Profiles of LCT_EEN_46   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAGCGTTCCCTCTCCTTGGCTAATTAA
1._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
2._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
3._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
4._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
5._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
6._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
7._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
8._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
9._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
10._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
11._LCT_EEN_46___
TTAGCGTTCCCTCTCCTTGGCTAATTAA
12._LCT_EEN_46___
CCGGCCTTCTCTTTCCAAGGCCAACTAT
13._LCT_EEN_46___
CCGGCCTTCTCTTTCCAAGGCCAACTAT
14._LCT_EEN_46___
CCGGCCTTCTCTTTCCAAGGCCAACTAT
15._LCT_EEN_46___
CCGGCCTTCTCTTTCCAAGGCCAACTAT
16._LCT_EEN_46___
CTAGGGCCTTCCCCCTAAAACCAGTTAT
17._LCT_EEN_46___
CTAGGGCCTTCCCCCTAAAACCAGTTAT
18._LCT_EEN_46___
AAAACCGGAAGG____AAAAGGGGAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCTCTGGGGAATTCCCCGTCTAAAGAG
1._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
2._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
3._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
4._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
5._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
6._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
7._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
8._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
9._LCT_EEN_46___
GGCTCTGGGGAATTCCCCGTCTAAAGAG
10._LCT_EEN_46___
GGCTCTGGGGAGTTCCCCGTCTAAAGAG
11._LCT_EEN_46___
GGCTCTGGGGAGTTCCCCGTCTAAAGAG
12._LCT_EEN_46___
GGCTTTCCGTAATTCCGGGGCCAAAGAA
13._LCT_EEN_46___
GGCTTTCCGTAATTCCGGGGCCAAAGAA
14._LCT_EEN_46___
GGCTTTCCGTAATTCCGGGGCCAAAGAA
15._LCT_EEN_46___
GGCTTTCCGTAATTCCGGGGCCAAAGAA
16._LCT_EEN_46___
GGCTCCGGGGAGTTACCCGTTTCCAGGG
17._LCT_EEN_46___
GGCTCCGGGGAGTTACCCGTTTCCAGGG
18._LCT_EEN_46___
GGAAGGCCCC__AAAACCAA__CC__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
1._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
2._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
3._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
4._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
5._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
6._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
7._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
8._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
9._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
10._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
11._LCT_EEN_46___
ATCCAACCCCCCTTACAACCX_XX_XX_XX_X
12._LCT_EEN_46___
ATCCAGCCCCTTGGACATGGX_XX_XX_XX_X
13._LCT_EEN_46___
ATCCAGCCCCTTGGACATGGX_XX_XX_XX_X
14._LCT_EEN_46___
ATCCAGCCCCTTGG__ATGGX_XX_XX_XX_X
15._LCT_EEN_46___
ATCCAGCCCCTTGG__ATGGX_XX_XX_XX_X
16._LCT_EEN_46___
AACCAACCACCTGTAATTGGX_XX_XX_XX_X
17._LCT_EEN_46___
AACCAACCACCTGTAATTGGX_XX_XX_XX_X
18._LCT_EEN_46___
AAGGAAGGAAGGAACCTTGGX_XX_XX_XX_X

Input profile: LCT_EEN_46

 
Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

1._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

7._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

8._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

9._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

12._LCT_EEN_46 GC-03-033-3-12

63.2 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

13._LCT_EEN_46

63.2 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_46 GC-03-033-3-12

62.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._LCT_EEN_46

62.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

57.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._LCT_EEN_46

57.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

19.7 %
33 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25