SNP Profiles of LCTEEN 46   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAGCGTTCCCTGTCTCCTTGGCTAATT
1._GC-03-033-3-12
TTAGCGTTCCCTGTCTCCTTGGCTAATT
2._GC-03-033-3-12
TTAGCGTTCCCTGTCTCCTTGGCTAATT
3._GC-03-033-3-12
TTAGCGTTCCCTGTCTCCTTGGCTAATT
4._GC-03-033-3-12
TTAGCGTTCCCTGTCTCCTTGGCTAATT
5._LCT_EEN_46
TTAGCGTTCCCTGTCTCCTTGGCTAATT
6._LCT_EEN_46
TTAGCGTTCCCTGTCTCCTTGGCTAATT
7._LCT_EEN_46
TTAGCGTTCCCTGTCTCCTTGGCTAATT
8._GC-03-033-3-12
TTAGCGTTCCCT__CTCCTTGGCTAATT
9._LCT_EEN_46
TTAGCGTTCCCT__CTCCTTGGCTAATT
10._LCT_EEN_46
TTAGCGTTCCCTGTCTCCTTGGCTAATT
11._LCT_EEN_46
TTAGCGTTCCCTGTCTCCTTGGCTAATT
12._GC-03-033-3-12
CCGGCCTTCTCTGGTTCCAAGGCCAACT
13._LCT_EEN_46
CCGGCCTTCTCTGGTTCCAAGGCCAACT
14._GC-03-033-3-12
CCGGCCTTCTCTGGTTCCAAGGCCAACT
15._LCT_EEN_46
CCGGCCTTCTCTGGTTCCAAGGCCAACT
16._GC-03-033-3-12
CTAGGGCCTTCCTTCCCTAAAACCAGTT
17._LCT_EEN_46
CTAGGGCCTTCCTTCCCTAAAACCAGTT
18._MITC-000412
AAAACCGGAAGGAA____AAAAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCTCTGGGGAATTCCCCGTCTAAAG
1._GC-03-033-3-12
AAGGCTCTGGGGAATTCCCCGTCTAAAG
2._GC-03-033-3-12
AAGGCTCTGGGGAATTCCCCGTCTAAAG
3._GC-03-033-3-12
AAGGCTCTGGGGAATTCCCCGTCTAAAG
4._GC-03-033-3-12
AAGGCTCTGGGGAATTCCCCGTCTAAAG
5._LCT_EEN_46
AAGGCTCTGGGGAATTCCCCGTCTAAAG
6._LCT_EEN_46
AAGGCTCTGGGGAATTCCCCGTCTAAAG
7._LCT_EEN_46
AAGGCTCTGGGGAATTCCCCGTCTAAAG
8._GC-03-033-3-12
AAGGCTCTGGGGAATTCCCCGTCTAAAG
9._LCT_EEN_46
AAGGCTCTGGGGAATTCCCCGTCTAAAG
10._LCT_EEN_46
AAGGCTCTGGGGAGTTCCCCGTCTAAAG
11._LCT_EEN_46
AAGGCTCTGGGGAGTTCCCCGTCTAAAG
12._GC-03-033-3-12
ATGGCTTTCCGTAATTCCGGGGCCAAAG
13._LCT_EEN_46
ATGGCTTTCCGTAATTCCGGGGCCAAAG
14._GC-03-033-3-12
ATGGCTTTCCGTAATTCCGGGGCCAAAG
15._LCT_EEN_46
ATGGCTTTCCGTAATTCCGGGGCCAAAG
16._GC-03-033-3-12
ATGGCTCCGGGGAGTTACCCGTTTCCAG
17._LCT_EEN_46
ATGGCTCCGGGGAGTTACCCGTTTCCAG
18._MITC-000412
AAGGAAGGCCCC__AAAACCAA__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGATCCAACCCCCCTTACAACCX_XX_XX_X
1._GC-03-033-3-12
AGATCCAACCCCCCTTACAACCX_XX_XX_X
2._GC-03-033-3-12
AGATCCAACCCCCCTTACAACCX_XX_XX_X
3._GC-03-033-3-12
AGATCCAACCCCCCTTACAACCX_XX_XX_X
4._GC-03-033-3-12
AGATCCAACCCCCCTTACAACCX_XX_XX_X
5._LCT_EEN_46
AGATCCAACCCCCCTTACAACCX_XX_XX_X
6._LCT_EEN_46
AGATCCAACCCCCCTTACAACCX_XX_XX_X
7._LCT_EEN_46
AGATCCAACCCCCCTTACAACCX_XX_XX_X
8._GC-03-033-3-12
AGATCCAACCCCCCTTACAACCX_XX_XX_X
9._LCT_EEN_46
AGATCCAACCCCCCTTACAACCX_XX_XX_X
10._LCT_EEN_46
AGATCCAACCCCCCTTACAACCX_XX_XX_X
11._LCT_EEN_46
AGATCCAACCCCCCTTACAACCX_XX_XX_X
12._GC-03-033-3-12
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
13._LCT_EEN_46
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
14._GC-03-033-3-12
AAATCCAGCCCCTTGG__ATGGX_XX_XX_X
15._LCT_EEN_46
AAATCCAGCCCCTTGG__ATGGX_XX_XX_X
16._GC-03-033-3-12
GGAACCAACCACCTGTAATTGGX_XX_XX_X
17._LCT_EEN_46
GGAACCAACCACCTGTAATTGGX_XX_XX_X
18._MITC-000412
GGAAGGAAGGAAGGAACCTTGGX_XX_XX_X

Input profile: LCT_EEN_46

 
Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

1._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

6._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

7._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

8._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

12._LCT_EEN_46 GC-03-033-3-12

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

13._LCT_EEN_46

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_46 GC-03-033-3-12

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._LCT_EEN_46

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

19.1 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25