SNP Profiles of LCT EEN 46 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
1._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
2._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
3._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
4._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
5._LCT_EEN_46	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
6._LCT_EEN_46	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
7._LCT_EEN_46	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
8._GC-03-033-3-12	TT	AG	CG	TT	CC	CT	__	CT	CC	TT	GG	CT	AA	TT
9._LCT_EEN_46	TT	AG	CG	TT	CC	CT	__	CT	CC	TT	GG	CT	AA	TT
10._LCT_EEN_46	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
11._LCT_EEN_46	TT	AG	CG	TT	CC	CT	GT	CT	CC	TT	GG	CT	AA	TT
12._GC-03-033-3-12	CC	GG	CC	TT	CT	CT	GG	TT	CC	AA	GG	CC	AA	CT
13._LCT_EEN_46	CC	GG	CC	TT	CT	CT	GG	TT	CC	AA	GG	CC	AA	CT
14._GC-03-033-3-12	CC	GG	CC	TT	CT	CT	GG	TT	CC	AA	GG	CC	AA	CT
15._LCT_EEN_46	CC	GG	CC	TT	CT	CT	GG	TT	CC	AA	GG	CC	AA	CT
16._GC-03-033-3-12	CT	AG	GG	CC	TT	CC	TT	CC	CT	AA	AA	CC	AG	TT
17._LCT_EEN_46	CT	AG	GG	CC	TT	CC	TT	CC	CT	AA	AA	CC	AG	TT
18._MITC-000412	AA	AA	CC	GG	AA	GG	AA	__	__	AA	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
1._GC-03-033-3-12	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
2._GC-03-033-3-12	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
3._GC-03-033-3-12	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
4._GC-03-033-3-12	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
5._LCT_EEN_46	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
6._LCT_EEN_46	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
7._LCT_EEN_46	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
8._GC-03-033-3-12	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
9._LCT_EEN_46	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA	AG
10._LCT_EEN_46	AA	GG	CT	CT	GG	GG	AG	TT	CC	CC	GT	CT	AA	AG
11._LCT_EEN_46	AA	GG	CT	CT	GG	GG	AG	TT	CC	CC	GT	CT	AA	AG
12._GC-03-033-3-12	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG
13._LCT_EEN_46	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG
14._GC-03-033-3-12	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG
15._LCT_EEN_46	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA	AG
16._GC-03-033-3-12	AT	GG	CT	CC	GG	GG	AG	TT	AC	CC	GT	TT	CC	AG
17._LCT_EEN_46	AT	GG	CT	CC	GG	GG	AG	TT	AC	CC	GT	TT	CC	AG
18._MITC-000412	AA	GG	AA	GG	CC	CC	__	AA	AA	CC	AA	__	CC	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
1._GC-03-033-3-12	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
2._GC-03-033-3-12	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
3._GC-03-033-3-12	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
4._GC-03-033-3-12	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
5._LCT_EEN_46	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
6._LCT_EEN_46	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
7._LCT_EEN_46	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
8._GC-03-033-3-12	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
9._LCT_EEN_46	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
10._LCT_EEN_46	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
11._LCT_EEN_46	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X	X_X
12._GC-03-033-3-12	AA	AT	CC	AG	CC	CC	TT	GG	AC	AT	GG	X_X	X_X	X_X
13._LCT_EEN_46	AA	AT	CC	AG	CC	CC	TT	GG	AC	AT	GG	X_X	X_X	X_X
14._GC-03-033-3-12	AA	AT	CC	AG	CC	CC	TT	GG	__	AT	GG	X_X	X_X	X_X
15._LCT_EEN_46	AA	AT	CC	AG	CC	CC	TT	GG	__	AT	GG	X_X	X_X	X_X
16._GC-03-033-3-12	GG	AA	CC	AA	CC	AC	CT	GT	AA	TT	GG	X_X	X_X	X_X
17._LCT_EEN_46	GG	AA	CC	AA	CC	AC	CT	GT	AA	TT	GG	X_X	X_X	X_X
18._MITC-000412	GG	AA	GG	AA	GG	AA	GG	AA	CC	TT	GG	X_X	X_X	X_X

Input profile: LCT_EEN_46

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 1 > FP

Dapeng Zhang, 2016

1._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

2._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 7

Dapeng Zhang, 2016

6._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 9

Dapeng Zhang, 2016

7._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 10

Dapeng Zhang, 2016

8._LCT_EEN_46 GC-03-033-3-12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._LCT_EEN_46

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 2

Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 478

Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 17 T1

Dapeng Zhang, 2016

12._LCT_EEN_46 GC-03-033-3-12

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

13._LCT_EEN_46

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 5 > FP

Dapeng Zhang, 2016

14._LCT_EEN_46 GC-03-033-3-12

61.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

15._LCT_EEN_46

61.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 4 > FP

Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

17._LCT_EEN_46

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 6

Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

19.1 %
34 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25