SNP Profiles of LCT EEN 46   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCCTTACCCTTCCCTAAAACCAG
1._GC-03-033-3-12
CTAGGGCCTTACCCTTCCCTAAAACCAG
2._LCT_EEN_46
TTAGCGTTCCCCCTGTCTCCTTGGCTAA
3._LCT_EEN_46
TTAGCGTTCCCCCTGTCTCCTTGGCTAA
4._GC-03-033-3-12
TTAGCGTTCC__CT__CTCCTTGGCTAA
5._LCT_EEN_46
TTAGCGTTCC__CT__CTCCTTGGCTAA
6._GC-03-033-3-12
TTAGCGTTCC__CTGTCTCCTTGGCTAA
7._GC-03-033-3-12
TTAGCGTTCC__CTGTCTCCTTGGCTAA
8._GC-03-033-3-12
TTAGCGTTCC__CTGTCTCCTTGGCTAA
9._GC-03-033-3-12
TTAGCGTTCC__CTGTCTCCTTGGCTAA
10._LCT_EEN_46
TTAGCGTTCC__CTGTCTCCTTGGCTAA
11._LCT_EEN_46
TTAGCGTTCC__CTGTCTCCTTGGCTAA
12._LCT_EEN_46
TTAGCGTTCC__CTGTCTCCTTGGCTAA
13._LCT_EEN_46
TTAGCGTTCC__CTGTCTCCTTGGCTAA
14._GC-03-033-3-12
CCGGCCTTCTACCTGGTTCCAAGGCCAA
15._LCT_EEN_46
CCGGCCTTCTACCTGGTTCCAAGGCCAA
16._GC-03-033-3-12
CCGGCCTTCTACCTGGTTCCAAGGCCAA
17._LCT_EEN_46
CCGGCCTTCTACCTGGTTCCAAGGCCAA
18._MITC-000412
AAAACCGGAAAAGGAA____AAAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCCGGGGAGTTACCCGTTTCC
1._GC-03-033-3-12
TTATGGCTCCGGGGAGTTACCCGTTTCC
2._LCT_EEN_46
TTAAGGCTCTGGGGAGTTCCCCGTCTAA
3._LCT_EEN_46
TTAAGGCTCTGGGGAGTTCCCCGTCTAA
4._GC-03-033-3-12
TTAAGGCTCTGGGGAATTCCCCGTCTAA
5._LCT_EEN_46
TTAAGGCTCTGGGGAATTCCCCGTCTAA
6._GC-03-033-3-12
TTAAGGCTCTGGGGAATTCCCCGTCTAA
7._GC-03-033-3-12
TTAAGGCTCTGGGGAATTCCCCGTCTAA
8._GC-03-033-3-12
TTAAGGCTCTGGGGAATTCCCCGTCTAA
9._GC-03-033-3-12
TTAAGGCTCTGGGGAATTCCCCGTCTAA
10._LCT_EEN_46
TTAAGGCTCTGGGGAATTCCCCGTCTAA
11._LCT_EEN_46
TTAAGGCTCTGGGGAATTCCCCGTCTAA
12._LCT_EEN_46
TTAAGGCTCTGGGGAATTCCCCGTCTAA
13._LCT_EEN_46
TTAAGGCTCTGGGGAATTCCCCGTCTAA
14._GC-03-033-3-12
CTATGGCTTTCCGTAATTCCGGGGCCAA
15._LCT_EEN_46
CTATGGCTTTCCGTAATTCCGGGGCCAA
16._GC-03-033-3-12
CTATGGCTTTCCGTAATTCCGGGGCCAA
17._LCT_EEN_46
CTATGGCTTTCCGTAATTCCGGGGCCAA
18._MITC-000412
AAAAGGAAGGCCCC__AAAACCAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACCAACCACCTGTAATTGGX_XX_X
1._GC-03-033-3-12
AGGGAACCAACCACCTGTAATTGGX_XX_X
2._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
3._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
4._GC-03-033-3-12
AGAGATCCAACCCCCCTTACAACCX_XX_X
5._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
6._GC-03-033-3-12
AGAGATCCAACCCCCCTTACAACCX_XX_X
7._GC-03-033-3-12
AGAGATCCAACCCCCCTTACAACCX_XX_X
8._GC-03-033-3-12
AGAGATCCAACCCCCCTTACAACCX_XX_X
9._GC-03-033-3-12
AGAGATCCAACCCCCCTTACAACCX_XX_X
10._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
11._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
12._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
13._LCT_EEN_46
AGAGATCCAACCCCCCTTACAACCX_XX_X
14._GC-03-033-3-12
AGAAATCCAGCCCCTTGG__ATGGX_XX_X
15._LCT_EEN_46
AGAAATCCAGCCCCTTGG__ATGGX_XX_X
16._GC-03-033-3-12
AGAAATCCAGCCCCTTGGACATGGX_XX_X
17._LCT_EEN_46
AGAAATCCAGCCCCTTGGACATGGX_XX_X
18._MITC-000412
__GGAAGGAAGGAAGGAACCTTGGX_XX_X

Input profile: LCT_EEN_46

 
Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

1._LCT_EEN_46 GC-03-033-3-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

2._LCT_EEN_46

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

3._LCT_EEN_46

58.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

4._LCT_EEN_46 GC-03-033-3-12

57.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._LCT_EEN_46

57.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

6._LCT_EEN_46 GC-03-033-3-12

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._LCT_EEN_46 GC-03-033-3-12

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._LCT_EEN_46 GC-03-033-3-12

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._LCT_EEN_46 GC-03-033-3-12

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

11._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

12._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

13._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_46 GC-03-033-3-12

50 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._LCT_EEN_46

50 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

17._LCT_EEN_46

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

37.1 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25