SNP Profiles of LP-335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCGTCTTTAAAATTAA
1._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
2._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
3._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
4._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
5._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
6._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
7._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
8._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
9._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
10._LP_3_/35_[POU]___
CCGGCGCCTT__TTTTCCCCAAGGCCAG
11._LP_3_/35_[POU]___
CTGGCCTTCCACCCGGTTCCATGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCGGGTAGTTCCCCGTCTCC
1._LP_3_/35_[POU]___
CTAAGGCCCCGG__AGCCCCCCGGCCAA
2._LP_3_/35_[POU]___
CTAAGGCCCCGG__AGCCCCCCGGCCAA
3._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
4._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
5._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
6._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
7._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
8._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
9._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
10._LP_3_/35_[POU]___
CTAAGGCCCCGGGGAGCCCCCCGGCCAA
11._LP_3_/35_[POU]___
TTATGGCTCTGGGTGGTTCCGGGTCCAA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAACGACCCGTACTTGGX_XX_X
1._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
2._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
3._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
5._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
9._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._LP_3_/35_[POU]___
GGGGAACCGGCCAATTTTAAATGGX_XX_X
11._LP_3_/35_[POU]___
AGAATTCTAACCCCCTGGCCAACCX_XX_X

Input profile: LP_3_/35_[POU]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B I 818 T13
 Dapeng Zhang, 2016

1._LP_3_/35_[POU]

52.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 3
 Dapeng Zhang, 2016

2._LP_3_/35_[POU] GC-08-283-8-55

52.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._LP_3_/35_[POU]

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 5
 Dapeng Zhang, 2016

4._LP_3_/35_[POU]

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 4
 Dapeng Zhang, 2016

5._LP_3_/35_[POU]

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 2
 Dapeng Zhang, 2016

6._LP_3_/35_[POU]

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 1
 Dapeng Zhang, 2016

7._LP_3_/35_[POU] GC-08-283-8-55

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._LP_3_/35_[POU] GC-08-283-8-55

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._LP_3_/35_[POU] GC-08-283-8-55

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._LP_3_/35_[POU] GC-08-283-8-55

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._LP_3_/35_[POU]

48.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 969
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25