SNP Profiles of LP 335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
1._LP_3_/35_[POU]
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
2._LP_3_/35_[POU]
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
3._LP_3_/35_[POU]
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
4._LP_3_/35_[POU]
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
5._GC-08-283-8-55
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
6._GC-08-283-8-55
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
7._GC-08-283-8-55
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
8._GC-08-283-8-55
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
9._GC-08-283-8-55
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
10._LP_3_/35_[POU]
TTAAGGCCTTCCGTCTTTAAAATTAATT
11._LP_3_/35_[POU]
CTGGCCTTCCCCGGTTCCATGGCCAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
1._LP_3_/35_[POU]
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
2._LP_3_/35_[POU]
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
3._LP_3_/35_[POU]
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
4._LP_3_/35_[POU]
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
5._GC-08-283-8-55
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
6._GC-08-283-8-55
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
7._GC-08-283-8-55
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
8._GC-08-283-8-55
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
9._GC-08-283-8-55
AAGGCCCCGGAGCCCCCCGGCCAAGGGG
10._LP_3_/35_[POU]
AAGGTTCCGGAGTTCCCCGTCTCCAGGG
11._LP_3_/35_[POU]
ATGGCTCTGGGGTTCCGGGTCCAAAGAA
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
1._LP_3_/35_[POU]
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
2._LP_3_/35_[POU]
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
3._LP_3_/35_[POU]
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
4._LP_3_/35_[POU]
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
5._GC-08-283-8-55
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
6._GC-08-283-8-55
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
7._GC-08-283-8-55
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
8._GC-08-283-8-55
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
9._GC-08-283-8-55
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
10._LP_3_/35_[POU]
AACTAACGACCCGTACTTGGX_XX_XX_XX_X
11._LP_3_/35_[POU]
TTCTAACCCCCTGGCCAACCX_XX_XX_XX_X

Input profile: LP_3_/35_[POU]

 
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Mars Center for Cocoa Science, Brazil
Location: 8855 3
 Dapeng Zhang, 2016

1._LP_3_/35_[POU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8855 5
 Dapeng Zhang, 2016

2._LP_3_/35_[POU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8855 4
 Dapeng Zhang, 2016

3._LP_3_/35_[POU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8855 2
 Dapeng Zhang, 2016

4._LP_3_/35_[POU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8855 1
 Dapeng Zhang, 2016

5._LP_3_/35_[POU] GC-08-283-8-55

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._LP_3_/35_[POU] GC-08-283-8-55

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._LP_3_/35_[POU] GC-08-283-8-55

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._LP_3_/35_[POU] GC-08-283-8-55

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._LP_3_/35_[POU] GC-08-283-8-55

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._LP_3_/35_[POU]

52.6 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B I 818 T13
 Dapeng Zhang, 2016

11._LP_3_/35_[POU]

44.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 969
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25