SNP Profiles of LP-335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
1._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
2._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
3._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
4._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
5._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
6._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
7._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
8._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
9._LP_3_/35_[POU]___
CCGGCGCCTTTTTTCCCCAAGGCCAGCT
10._LP_3_/35_[POU]___
TTAAGGCCTTCCGTCTTTAAAATTAATT
11._LP_3_/35_[POU]___
CTGGCCTTCCCCGGTTCCATGGCCAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
1._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
2._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
3._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
4._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
5._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
6._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
7._LP_3_/35_[POU]___
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
8._LP_3_/35_[POU]___
AAGGCCCCGG__AGCCCCCCGGCCAAGG
9._LP_3_/35_[POU]___
AAGGCCCCGG__AGCCCCCCGGCCAAGG
10._LP_3_/35_[POU]___
AAGGTTCCGGGTAGTTCCCCGTCTCCAG
11._LP_3_/35_[POU]___
ATGGCTCTGGGTGGTTCCGGGTCCAAAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._LP_3_/35_[POU]___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._LP_3_/35_[POU]___
GGAACTAACGACCCGTACTTGGX_XX_XX_X
11._LP_3_/35_[POU]___
AATTCTAACCCCCTGGCCAACCX_XX_XX_X

Input profile: LP_3_/35_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 8855 5
 Dapeng Zhang, 2016

1._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 4
 Dapeng Zhang, 2016

2._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 2
 Dapeng Zhang, 2016

3._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 1
 Dapeng Zhang, 2016

4._LP_3_/35_[POU] GC-08-283-8-55

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._LP_3_/35_[POU] GC-08-283-8-55

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._LP_3_/35_[POU] GC-08-283-8-55

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._LP_3_/35_[POU] GC-08-283-8-55

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 3
 Dapeng Zhang, 2016

9._LP_3_/35_[POU] GC-08-283-8-55

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._LP_3_/35_[POU]

52.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B I 818 T13
 Dapeng Zhang, 2016

11._LP_3_/35_[POU]

44.9 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 969
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25