SNP Profiles of MAN 15 /2 [BRA] View Data

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_Input profile	CC	AA	CG	CC	CT	CC	TT	GT	CT	TT	AA	AG	CT	AA
1._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	CC	TT	GT	CT	TT	AA	AG	CT	AA
2._RUQ_86	__	__	CG	__	__	__	__	GT	__	TT	__	AG	__	AA
3._RUQ_86	CC	AG	CG	CC	CT	CC	TT	GT	CT	TT	AA	AG	CT	AA
4._RUQ_86	__	AA	CG	CC	__	__	__	__	__	__	__	__	CT	AA
5._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	CC	TT	GT	CT	TT	AA	GG	CT	AA
6._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	CC	TT	GT	CT	TT	AA	GG	CT	AA
7._GC-05-072-2-23	CC	AA	CG	CC	CT	CC	TT	GT	CT	TT	AA	GG	CT	AA
8._GC-05-072-2-23	CC	AA	CG	CC	CT	CC	TT	GT	CT	TT	AA	GG	CT	AA
9._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	__	TT	GT	CT	TT	AA	GG	CT	AA
10._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	__	TT	GT	CT	TT	AA	GG	CT	AA
11._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	__	TT	GT	CT	TT	AA	GG	CT	AA
12._GC-05-072-2-23	CC	AA	CG	CC	CT	__	TT	GT	CT	TT	AA	GG	CT	AA
13._GC-05-072-2-23	CC	AA	CG	CC	CT	__	TT	GT	CT	TT	AA	GG	CT	AA
14._GC-05-072-2-23	CC	AA	CG	CC	CT	__	TT	GT	CT	TT	AA	GG	CT	AA
15._MAN15/2[BRA]	__	__	CG	__	__	__	__	__	__	__	__	__	CT	__
16._MAN_15_/2_[BRA]	__	AA	GG	CC	__	AA	TT	TT	CC	__	__	AA	CC	AA
17._RUQ_86	GG	AA	CG	GG	AG	CC	AA	AA	__	__	AA	AG	AG	AA

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_Input profile	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG
1._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG
2._RUQ_86	__	__	__	__	GG	GG	AA	__	AC	GG	__	__	AC	__
3._RUQ_86	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG
4._RUQ_86	__	__	__	TT	GG	GG	__	CC	AC	CG	GT	CC	AC	AG
5._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
6._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
7._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
8._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
9._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
10._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
11._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
12._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
13._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
14._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
15._MAN15/2[BRA]	__	__	__	CT	CC	__	__	__	AC	CG	__	__	__	__
16._MAN_15_/2_[BRA]	AA	GG	TT	CC	GG	GG	AA	CT	AA	CG	TT	CT	CC	AA
17._RUQ_86	AA	GG	AG	AG	CC	CC	__	GG	AC	CG	AC	__	AC	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	TT	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X
1._MAN_15_/2_[BRA]	GG	AA	TT	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X
2._RUQ_86	__	__	__	AG	__	__	__	__	CC	__	__	X_X	X_X	X_X
3._RUQ_86	GG	AA	TT	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X
4._RUQ_86	__	AA	TT	AG	CG	AC	CT	GT	CC	__	__	X_X	X_X	X_X
5._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
6._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
7._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
8._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
9._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
10._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
11._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
12._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
13._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
14._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
15._MAN15/2[BRA]	__	AA	__	AG	CG	AC	CT	__	CC	__	__	X_X	X_X	X_X
16._MAN_15_/2_[BRA]	GG	AA	CC	GG	CG	AC	CT	GG	CC	TT	GG	X_X	X_X	X_X
17._RUQ_86	GG	AA	AA	AG	CG	AC	AG	AC	CC	AT	GG	X_X	X_X	X_X

Input profile: MAN_15_/2_[BRA]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

1._MAN_15_/2_[BRA]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

2._MAN_15_/2_[BRA] RUQ_86

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

3._MAN_15_/2_[BRA] RUQ_86

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] RUQ_86

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

6._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

7._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

8._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

10._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

11._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

12._MAN_15_/2_[BRA] GC-05-072-2-23

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

13._MAN_15_/2_[BRA] GC-05-072-2-23

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

14._MAN_15_/2_[BRA] GC-05-072-2-23

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._MAN_15_/2_[BRA] MAN15/2[BRA]

87.5 %
12 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

16._MAN_15_/2_[BRA]

70 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

54.4 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25