SNP Profiles of PA 107 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
2._RUQ_1728
____CG________TT__CC__AG__AA
3._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
4._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
12._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
13._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
14._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
15._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
16._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
17._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
21._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
24._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
25._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
26._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
27._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
28._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
29._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
30._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
31._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
32._PA_107_[PER]
CCAGCGTTTTCCTT__CCCCAAAGCCAA
33._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
34._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCC__
35._PA_107_[PER]
CCAGCGTTTTCCTTTTCC__AAAGCCAA
36._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC__AAAGCCAA
37._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
38._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
39._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
40._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
41._GC-02-001-1-01
CCAGCGTTTTCCTT__CCCCAAAGCCAA
42._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
43._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCC__
44._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
45._RUQ_1728
GGAGCGAAAACCAAAA____AAAGGGAA
46._MITC-000340
GGAGCGAAAACCAAAA____AAAGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCTCCGGGGAACTCCCGTTCTAA
1._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
2._RUQ_1728
__________GGGGAA__CCCG____AA
3._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
4._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
5._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
6._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
7._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
8._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
9._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
10._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
11._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
12._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
13._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
14._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
15._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
16._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
17._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
18._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
19._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
20._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
21._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
22._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
23._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
24._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
25._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
26._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
27._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
28._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
29._PA_107_[PER]
CTAACG__CCGGGGGGCTCCCGTTCTAA
30._PA_107_[PER]
CTATCGCTCCGGGGGGCTCCCGTTCTAA
31._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
32._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
33._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
34._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
35._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
36._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
37._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
38._GC-08-111-3-10
CTAACG__CCGGGGGGCTCCCGTTCTAA
39._GC-08-111-3-10
CTATCGCTCCGGGGGGCTCCCGTTCTAA
40._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
41._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
42._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
43._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
44._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
45._RUQ_1728
AGAACGAGGGCCCC__AGCCCGAA__AA
46._MITC-000340
AGAACGAGGGCCCC__AGCCCGAA__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACCAGCCACCTGTACATGGX_XX_X
1._PA_107_[PER]
GGGGAACCAGCCACCTGTACATGGX_XX_X
2._RUQ_1728
________AG________AC____X_XX_X
3._GC-08-111-3-10
GGGGAACCAGCC__CTGTACATGGX_XX_X
4._GC-08-111-3-10
GGGGAACCAGCC__CTGTACATGGX_XX_X
5._PA_107_[PER]
GGGGAACCAGCC__CTGTACATGGX_XX_X
6._PA_107_[PER]
GGGGAACCAGCC__CTGTACATGGX_XX_X
7._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
8._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
9._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
10._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
11._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
12._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
13._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
14._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
15._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
16._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
17._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
18._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
19._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
20._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
21._GC-08-111-3-10
GGGGAACCAGCCAACTGTACATGGX_XX_X
22._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
23._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
24._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
25._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
26._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
27._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
28._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
29._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
30._PA_107_[PER]
GGGGAACCAGCC__CTGTACATGGX_XX_X
31._PA_107_[PER]
GGGGAACCAGCCAACT__ACATGGX_XX_X
32._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
33._PA_107_[PER]
GGGGAACCAGCCAA__GTACATGGX_XX_X
34._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
35._PA_107_[PER]
GGGGAACCAGCCAACTGTACATGGX_XX_X
36._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
37._GC-02-001-1-01
GGGGAACCAGCCAACT__ACATGGX_XX_X
38._GC-08-111-3-10
GGGGAACCAGCCAACTGTACATGGX_XX_X
39._GC-08-111-3-10
GGGGAACCAGCC__CTGTACATGGX_XX_X
40._GC-08-111-3-10
GGGGAACCAGCCAA__GTACATGGX_XX_X
41._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
42._GC-02-001-1-01
GGGGAACCAGCCAA__GTACATGGX_XX_X
43._GC-02-001-1-01
GGGGAACCAGCCAACTGTACATGGX_XX_X
44._PA_107_[PER]
GGGGAACCAGCCAA__GTACATGGX_XX_X
45._RUQ_1728
__GGAAGGAGGGACAGACACATGGX_XX_X
46._MITC-000340
__GGAAGGAGGGACAGACACATGGX_XX_X

Input profile: PA_107_[PER]

 
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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

2._PA_107_[PER] RUQ_1728

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.847 Sca
0.137

3._PA_107_[PER] GC-08-111-3-10

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

4._PA_107_[PER] GC-08-111-3-10

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._PA_107_[PER]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

6._PA_107_[PER]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

7._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

8._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

9._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

10._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

11._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

12._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

13._PA_107_[PER]

96.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

14._PA_107_[PER]

96.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

15._PA_107_[PER]

96.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

16._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

17._PA_107_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016

18._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._PA_107_[PER] GC-08-111-3-10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

25._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

26._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._PA_107_[PER] GC-02-001-1-01

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

29._PA_107_[PER]

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

30._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

31._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

32._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

33._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

34._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

35._PA_107_[PER]

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

36._PA_107_[PER] GC-02-001-1-01

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

37._PA_107_[PER] GC-02-001-1-01

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

38._PA_107_[PER] GC-08-111-3-10

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

39._PA_107_[PER] GC-08-111-3-10

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

40._PA_107_[PER] GC-08-111-3-10

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

41._PA_107_[PER] GC-02-001-1-01

96.2 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

42._PA_107_[PER] GC-02-001-1-01

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

43._PA_107_[PER] GC-02-001-1-01

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

44._PA_107_[PER]

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

45._PA_107_[PER] RUQ_1728

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

51.4 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25